CN186541

Overview
NameCN186541
Unique NameCN186541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS32_XENLA (40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-B PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.311e-85
Identity = 161/188 (85.64%), Postives = 169/188 (89.89%), Query Frame = -1
Query:  240 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 803
            LAEDGYSGVEVRVTP +TEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WDP+GK GP  PLPD V+I  PKDE
Sbjct:   29 LAEDGYSGVEVRVTPTQTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_PONAB (40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.713e-85
Identity = 161/188 (85.64%), Postives = 168/188 (89.36%), Query Frame = -1
Query:  240 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 803
            LAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAE+V  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GP  PLPD V+I  PKDE
Sbjct:   29 LAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEEVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_ICTPU (40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.983e-85
Identity = 160/188 (85.11%), Postives = 168/188 (89.36%), Query Frame = -1
Query:  240 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 803
            LAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FP  SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WDP+GK GP  PLPD V+I  PK+E
Sbjct:   29 LAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEE 216          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_MANSE (40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.357e-82
Identity = 153/195 (78.46%), Postives = 167/195 (85.64%), Query Frame = -1
Query:  219 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPT 803
            LAEDGYSGVEVRVTP R+EIII ATRTQ+VLGEKGRRIRELTSVVQKRF  PE SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR QRAKSMKF DG M+ SG P N+Y+++A RHVLLRQGVLGIKVKIML WD  GK GP  P PD + +  PKDE   ++PT
Sbjct:   30 LAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEPT 224          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_DROME (40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 3.128e-79
Identity = 149/204 (73.04%), Postives = 169/204 (82.84%), Query Frame = -1
Query:  192 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVATDIEVP 803
            LAEDGYSGVEVRVTP RTEIII AT+TQ VLGEKGRRIRELT++VQKRF F    +ELYAEKV  RGLCAIAQAESLRYKL GGLAVRRACYGVLR+IMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG P N+Y+++A RHVLLRQGVLGIKVK+ML +DP  K GP  PLPD V++  PK+E+ Y  P    T+ ++P
Sbjct:   31 LAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETP---ETEYKIP 231          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_CAEEL (40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=1 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.314e-77
Identity = 150/208 (72.12%), Postives = 169/208 (81.25%), Query Frame = -1
Query:  192 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE----EEYVKPTLVATDIEVP 803
            LAEDGYSGVEVR TP R E+II ATRTQNVLGE+GRRI+ELTSVVQKRF F E SVELYAEKV+NRGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGA+G EVIVSGKLR QRAK+MKF DG M+ SG PVN+YI  AVRHV LRQGV+GIKVKIML +DP G+ GP   LPD V I  P++E    E + +      D++VP
Sbjct:   31 LAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQHKEEKKDVQVP 238          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_SCHPO (40S ribosomal protein S3 OS=Schizosaccharomyces pombe GN=rps3 PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 7.212e-76
Identity = 146/208 (70.19%), Postives = 169/208 (81.25%), Query Frame = -1
Query:  180 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVATDIEVPIQVA 803
            L+E+GYSG EVRVTP R+EIIIRAT TQ+VLGEKGRRIRELT++VQKRFKF EN+VELYAEKV NRGLCA+AQ ESLRYKLL GLAVRRA YGVLR++ME+GAKGCEV++SGKLRA RAKSMKF DG+M+ SGQP  ++IDSA RHVLLRQGVLG+KVKIML   P  K      LPD+V +  PK+EE   KP  V   I  P++ A
Sbjct:   31 LSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIML---PEPKTRQKKSLPDIVVVLDPKEEEPITKPYTV---INQPVEAA 232          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_YEAST (40S ribosomal protein S3 OS=Saccharomyces cerevisiae GN=RPS3 PE=1 SV=5)

HSP 1 Score: 263.462 bits (672), Expect = 1.009e-69
Identity = 131/196 (66.84%), Postives = 163/196 (83.16%), Query Frame = -1
Query:  216 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTL 803
            LAE+GYSGVEVRVTP +TE+IIRATRTQ+VLGE GRRI ELT +VQKRFK+   ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA YGV+R++MESGAKGCEV+VSGKLRA RAK+MKF DG+++ SGQPVN++ID+A RHVL+RQGVLGIKVKIM   DP   +     LPD VTI  PK+EE  + P++
Sbjct:   29 LAEEGYSGVEVRVTPTKTEVIIRATRTQDVLGENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMR--DPAKSRTGPKALPDAVTIIEPKEEEPILAPSV 222          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_DICDI (40S ribosomal protein S3 OS=Dictyostelium discoideum GN=rps3 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.046e-58
Identity = 116/182 (63.74%), Postives = 141/182 (77.47%), Query Frame = -1
Query:  258 EDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGK--QGPTTPLPDLVTI 797
            ++GYSGVE++ +P  TEIIIRA++TQ V+G   RRI+EL S+VQKRF F E +V L+AEK+ NRGLCA+AQAESL+ KLL GL VR+ACY ++  IM  GAKGCEVIVSGKLRAQRAKSMKF+DGYM+ SGQP  ++ID A RHVLLRQG LG+KV IML +D   K       P PD+V I
Sbjct:   34 DEGYSGVELKTSPGLTEIIIRASKTQAVVGPNARRIQELCSLVQKRFNFKEGTVVLFAEKILNRGLCAVAQAESLKLKLLAGLPVRKACYAIVHQIMTRGAKGCEVIVSGKLRAQRAKSMKFRDGYMIKSGQPSKDFIDFACRHVLLRQGTLGVKVAIMLPYDETRKIHGACNIPQPDVVVI 215          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_ENCCU (40S ribosomal protein S3 OS=Encephalitozoon cuniculi GN=RPS3 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.285e-40
Identity = 80/187 (42.78%), Postives = 123/187 (65.78%), Query Frame = -1
Query:  243 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKD 803
            L  +G+S +E+R+     +II++  +    +GEK  R+R+   +  +R + P+ SVE+  EKV+ +GLCA+ QA  +R K+LGG+  RRA    L+    + A+GC++IVSGKL+ QRAKS+KF+DG ++ SG  V +YI++    V  +QGV+GI+V+IML +DP G  GP  PLPD +TI  P +
Sbjct:   40 LVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQFQHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHAKAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIMLPYDPEGVLGPNYPLPDRITILEPSE 226          
The following BLAST results are available for this feature:
BLAST of CN186541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS32_XENLA1.311e-8585.6440S ribosomal protein S3-B OS=Xenopus laevis GN=rp... [more]
RS3_PONAB1.713e-8585.6440S ribosomal protein S3 OS=Pongo abelii GN=RPS3 P... [more]
RS3_ICTPU4.983e-8585.1140S ribosomal protein S3 OS=Ictalurus punctatus GN... [more]
RS3_MANSE1.357e-8278.4640S ribosomal protein S3 OS=Manduca sexta GN=RpS3 ... [more]
RS3_DROME3.128e-7973.0440S ribosomal protein S3 OS=Drosophila melanogaste... [more]
RS3_CAEEL1.314e-7772.1240S ribosomal protein S3 OS=Caenorhabditis elegans... [more]
RS3_SCHPO7.212e-7670.1940S ribosomal protein S3 OS=Schizosaccharomyces po... [more]
RS3_YEAST1.009e-6966.8440S ribosomal protein S3 OS=Saccharomyces cerevisi... [more]
RS3_DICDI1.046e-5863.7440S ribosomal protein S3 OS=Dictyostelium discoide... [more]
RS3_ENCCU1.285e-4042.7840S ribosomal protein S3 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186541 ID=CN186541; Name=CN186541; organism=Citrus sinensis; type=EST; length=803bp
TTACAGAAATTGGTTGATAATTATGAAATCTTTAACAATACTGATGACTA
CCTTATATCAAAATTAACACCATGGAGTCTGAGGTATCCTTCCTTAGAAA
CAAAAATGAAAACTAGAGCACTTCAAATACCATTGATAAAATATCAAAGA
AGATGAGACTATACCCCACTTCGGCCTTAAGCCACTTGGATTGGGACCTC
AATATCAGTAGCAACCAATGTTGGCTTGACATACTCCTCTTCATCCTTGG
GTGAGTGGATTGTTACGAGATCAGGTAGAGGGGTAGTAGGACCTTGCTTT
CCATTAGGATCCCAACTAAGCATGATCTTGACCTTAATACCAAGTACACC
CTGTCTCAAAAGAACATGTCTCACAGCAGAGTCAATATATTCATTCACTG
GCTGACCAGAAGAGACCATATATCCATCCTTAAACTTCATTGATTTTGCA
CGTTGTGCCCTCAACTTTCCACTGACAATGACCTCACATCCCTTGGCTCC
ACTTTCCATAATGAACCTCAAGACACCATAGCAAGCCCTGCGAACAGCAA
GCCCACCAAGGAGCTTGTAGCGAAGAGACTCGGCTTGAGCAATGGCACAT
AGTCCTCTATTGTTGACTTTCTCAGCGTACAGCTCCACGCTATTCTCCGG
GAATTTGAACCTTTTCTGCACCACTGATGTCAGCTCTCTAATTCTCCTCC
CTTTCTCACCAAGAACGTTCTGAGTGCGAGTGGCTCGGATGATGATCTCA
GTACGCATGGGAGTTACCCTGACCTCTACTCCAGAATAACCGTCCTCCGC
AAG
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