CN186541
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_PYRFU (30S ribosomal protein S3P OS=Pyrococcus furiosus GN=rps3p PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 8.639e-29 Identity = 75/192 (39.06%), Postives = 105/192 (54.69%), Query Frame = -1 Query: 228 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYV 803 L GY G++++ TP+ T++II A V+G GRRIRELT +++K+F +E+ E++ N L A QA L L G+ RRA Y LR IM +GA+G E+ +SGKL +RAKS++F GY+ G P + LL+ GV+G+KV IM P LPD + I EEE V Sbjct: 25 LRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPGARLPDEIEIIEKPVEEEVV 205
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_THEON (30S ribosomal protein S3P OS=Thermococcus onnurineus (strain NA1) GN=rps3p PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.128e-28 Identity = 73/191 (38.22%), Postives = 105/191 (54.97%), Query Frame = -1 Query: 234 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPD-LVTIHSPKDEEE 803 L GY G++++ TP+ T++II A V+G GRRIRELT +++++F +E+ E++ N L A QA L L G+ RRA Y +R IM +GA+G E+ +SGKL +RAKS++F GY+ G P + LL+ GV+G+KV IM P LPD + I P EEE Sbjct: 25 LRRAGYGGIDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGVHFRRAAYAAIRAIMRNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVSIM---------PPDAKLPDEIEVIEKPIQEEE 204
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_THESM (30S ribosomal protein S3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3p PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 4.287e-28 Identity = 71/190 (37.37%), Postives = 103/190 (54.21%), Query Frame = -1 Query: 234 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEE 803 L GY G++++ TP+ T+++I R V+G GR+IRELT ++++RF +E+ E++ N A QA L L G+ RRA Y +R IM +GA+G E+ +SGKL +RAKS++F GY+ G P + LL+ GVLG+KV IM P LPD + I EEE Sbjct: 25 LRRAGYGGLDIKKTPLGTKVVIFVERPGFVIGRGGRKIRELTRILERRFNLENPQIEV--EEIKNSYFNAKVQATRLAQALERGVHFRRAAYAAIRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYIAKVGNPAETLVSRGYAQALLKLGVLGVKVSIM---------PPDARLPDEIEIVEKPIEEE 203
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_THEGJ (30S ribosomal protein S3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3p PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 7.313e-28 Identity = 70/189 (37.04%), Postives = 104/189 (55.03%), Query Frame = -1 Query: 237 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEE 803 L GY G++++ TP+ T++II A V+G GRRIRELT +++++F +E+ E++ N L A QA L L G+ RRA Y +R IM +GA+G E+ +SGKL +RAKS++F GY+ G P + LL+ GV+G+KV IM P LPD + + +EE Sbjct: 25 LRRAGYGGIDIKKTPLGTKVIIFAASPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPDARLPDEIEVKEIVEEE 202
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_PYRAB (30S ribosomal protein S3P OS=Pyrococcus abyssi GN=rps3p PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.779e-27 Identity = 69/190 (36.32%), Postives = 104/190 (54.74%), Query Frame = -1 Query: 234 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEE 803 L GY G++++ TP+ T++II A V+G GRRIRELT +++++F +++ +++ N L A QA + L G+ RRA Y +R IM +GA+G E+ +SGKL +RAKS++F GY+ G P + LL+ GV+G+KV IM P LPD + I EEE Sbjct: 25 LRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPDARLPDEIEIIEKPVEEE 203
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_PYRHO (30S ribosomal protein S3P OS=Pyrococcus horikoshii GN=rps3p PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27 Identity = 69/190 (36.32%), Postives = 104/190 (54.74%), Query Frame = -1 Query: 234 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEE 803 L GY G++++ TP+ T++II A V+G GRRIRELT +++++F +++ +++ N L A QA + L G+ RRA Y +R IM +GA+G E+ +SGKL +RAKS++F GY+ G P + LL+ GV+G+KV IM P LPD + I EEE Sbjct: 25 LRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSAMRAIMNNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPDARLPDEIEIVEKPAEEE 203
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_PYRKO (30S ribosomal protein S3P OS=Pyrococcus kodakaraensis GN=rps3p PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.740e-27 Identity = 70/189 (37.04%), Postives = 102/189 (53.97%), Query Frame = -1 Query: 237 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEE 803 L GY G++++ TP+ T++ I A V+G GRRIRELT +++K+F +E+ E++ N L A QA L L G+ RRA Y +R IM +GA+G E+ +SGKL +RAKS++F GY+ G P + L+ GV+G+KV IM P LPD + I +EE Sbjct: 25 LRRAGYGGLDIKKTPLGTKVTIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSRGYAQAQLKLGVIGVKVSIM---------PPDAKLPDEIEIKEIVEEE 202
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_HALMA (30S ribosomal protein S3P OS=Haloarcula marismortui GN=rps3p PE=3 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 5.795e-25 Identity = 66/195 (33.85%), Postives = 110/195 (56.41%), Query Frame = -1 Query: 219 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPT 803 L GY G++V TPM T+I+++A + V+G+ G+ IR++T+ ++ RF + V++ ++V+ L A A+ L L G R+A + + IMESGA G E+++SGK+ R++ KF GY+ +G+P E +DS V +++ G +G++VKI+ P LPD I+ D E+YV T Sbjct: 25 LGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGVRVKII---------PPNAELPDDFEIYEDVDVEDYVADT 208
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_METJA (30S ribosomal protein S3P OS=Methanocaldococcus jannaschii GN=rps3p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.093e-23 Identity = 69/193 (35.75%), Postives = 103/193 (53.37%), Query Frame = -1 Query: 225 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVK 803 L++ GYS ++R TP+ T+III A + V+G +G RIRELT + K F + +++ + V N L A A+ + L GL RR + +R +M +GAKG VI+SGKL +RA++ KF GYM G+P E +D + GV+G+ VKIM P LPD + I + + V+ Sbjct: 24 LSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIRELTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVMNAGAKGVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKPGVIGVTVKIM---------RPDVLLPDEIIIKEDAEVKHVVE 205
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_METTH (30S ribosomal protein S3P OS=Methanobacterium thermoautotrophicum GN=rps3p PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.435e-23 Identity = 66/201 (32.84%), Postives = 105/201 (52.24%), Query Frame = -1 Query: 201 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVATDI 803 L GY G++V+VTPM T +++ A R V+G G+ +R +T ++ +F VE+ ++V+ L A + L G+ RR Y +R IM +GA+G EV +SGK+R R+ + KF DGY+ G+P +++ V L+ GVLG+ V+IM P LPD V I P+ E + A+++ Sbjct: 24 LERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVRIM---------PPDVVLPDKVEIEDPRVTETPAEEASEASEV 213 The following BLAST results are available for this feature:
BLAST of CN186541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186541 ID=CN186541; Name=CN186541; organism=Citrus sinensis; type=EST; length=803bpback to top |