CN186541

Overview
NameCN186541
Unique NameCN186541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_PYRFU (30S ribosomal protein S3P OS=Pyrococcus furiosus GN=rps3p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.639e-29
Identity = 75/192 (39.06%), Postives = 105/192 (54.69%), Query Frame = -1
Query:  228 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYV 803
            L   GY G++++ TP+ T++II A     V+G  GRRIRELT +++K+F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  LR IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM          P   LPD + I     EEE V
Sbjct:   25 LRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPGARLPDEIEIIEKPVEEEVV 205          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_THEON (30S ribosomal protein S3P OS=Thermococcus onnurineus (strain NA1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.128e-28
Identity = 73/191 (38.22%), Postives = 105/191 (54.97%), Query Frame = -1
Query:  234 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPD-LVTIHSPKDEEE 803
            L   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM          P   LPD +  I  P  EEE
Sbjct:   25 LRRAGYGGIDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGVHFRRAAYAAIRAIMRNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVSIM---------PPDAKLPDEIEVIEKPIQEEE 204          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_THESM (30S ribosomal protein S3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.287e-28
Identity = 71/190 (37.37%), Postives = 103/190 (54.21%), Query Frame = -1
Query:  234 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEE 803
            L   GY G++++ TP+ T+++I   R   V+G  GR+IRELT ++++RF      +E+  E++ N    A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GVLG+KV IM          P   LPD + I     EEE
Sbjct:   25 LRRAGYGGLDIKKTPLGTKVVIFVERPGFVIGRGGRKIRELTRILERRFNLENPQIEV--EEIKNSYFNAKVQATRLAQALERGVHFRRAAYAAIRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYIAKVGNPAETLVSRGYAQALLKLGVLGVKVSIM---------PPDARLPDEIEIVEKPIEEE 203          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_THEGJ (30S ribosomal protein S3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.313e-28
Identity = 70/189 (37.04%), Postives = 104/189 (55.03%), Query Frame = -1
Query:  237 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEE 803
            L   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM          P   LPD + +    +EE
Sbjct:   25 LRRAGYGGIDIKKTPLGTKVIIFAASPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPDARLPDEIEVKEIVEEE 202          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_PYRAB (30S ribosomal protein S3P OS=Pyrococcus abyssi GN=rps3p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.779e-27
Identity = 69/190 (36.32%), Postives = 104/190 (54.74%), Query Frame = -1
Query:  234 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEE 803
            L   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +++  +++ N  L A  QA  +   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM          P   LPD + I     EEE
Sbjct:   25 LRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPDARLPDEIEIIEKPVEEE 203          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_PYRHO (30S ribosomal protein S3P OS=Pyrococcus horikoshii GN=rps3p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.629e-27
Identity = 69/190 (36.32%), Postives = 104/190 (54.74%), Query Frame = -1
Query:  234 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEE 803
            L   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +++  +++ N  L A  QA  +   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM          P   LPD + I     EEE
Sbjct:   25 LRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSAMRAIMNNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPDARLPDEIEIVEKPAEEE 203          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_PYRKO (30S ribosomal protein S3P OS=Pyrococcus kodakaraensis GN=rps3p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.740e-27
Identity = 70/189 (37.04%), Postives = 102/189 (53.97%), Query Frame = -1
Query:  237 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEE 803
            L   GY G++++ TP+ T++ I A     V+G  GRRIRELT +++K+F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +        L+ GV+G+KV IM          P   LPD + I    +EE
Sbjct:   25 LRRAGYGGLDIKKTPLGTKVTIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSRGYAQAQLKLGVIGVKVSIM---------PPDAKLPDEIEIKEIVEEE 202          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_HALMA (30S ribosomal protein S3P OS=Haloarcula marismortui GN=rps3p PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.795e-25
Identity = 66/195 (33.85%), Postives = 110/195 (56.41%), Query Frame = -1
Query:  219 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPT 803
            L   GY G++V  TPM T+I+++A +   V+G+ G+ IR++T+ ++ RF   +  V++  ++V+   L A   A+ L   L  G   R+A +  +  IMESGA G E+++SGK+   R++  KF  GY+  +G+P  E +DS V   +++ G +G++VKI+          P   LPD   I+   D E+YV  T
Sbjct:   25 LGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGVRVKII---------PPNAELPDDFEIYEDVDVEDYVADT 208          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_METJA (30S ribosomal protein S3P OS=Methanocaldococcus jannaschii GN=rps3p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.093e-23
Identity = 69/193 (35.75%), Postives = 103/193 (53.37%), Query Frame = -1
Query:  225 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVK 803
            L++ GYS  ++R TP+ T+III A +   V+G +G RIRELT  + K F   +  +++  + V N  L A   A+ +   L  GL  RR  +  +R +M +GAKG  VI+SGKL  +RA++ KF  GYM   G+P  E +D        + GV+G+ VKIM          P   LPD + I    + +  V+
Sbjct:   24 LSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIRELTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVMNAGAKGVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKPGVIGVTVKIM---------RPDVLLPDEIIIKEDAEVKHVVE 205          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_METTH (30S ribosomal protein S3P OS=Methanobacterium thermoautotrophicum GN=rps3p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.435e-23
Identity = 66/201 (32.84%), Postives = 105/201 (52.24%), Query Frame = -1
Query:  201 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVATDI 803
            L   GY G++V+VTPM T +++ A R   V+G  G+ +R +T  ++ +F      VE+  ++V+   L     A  +   L  G+  RR  Y  +R IM +GA+G EV +SGK+R  R+ + KF DGY+   G+P  +++      V L+ GVLG+ V+IM          P   LPD V I  P+  E   +    A+++
Sbjct:   24 LERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVRIM---------PPDVVLPDKVEIEDPRVTETPAEEASEASEV 213          
The following BLAST results are available for this feature:
BLAST of CN186541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_PYRFU8.639e-2939.0630S ribosomal protein S3P OS=Pyrococcus furiosus G... [more]
RS3_THEON1.128e-2838.2230S ribosomal protein S3P OS=Thermococcus onnurine... [more]
RS3_THESM4.287e-2837.3730S ribosomal protein S3P OS=Thermococcus sibiricu... [more]
RS3_THEGJ7.313e-2837.0430S ribosomal protein S3P OS=Thermococcus gammatol... [more]
RS3_PYRAB2.779e-2736.3230S ribosomal protein S3P OS=Pyrococcus abyssi GN=... [more]
RS3_PYRHO3.629e-2736.3230S ribosomal protein S3P OS=Pyrococcus horikoshii... [more]
RS3_PYRKO4.740e-2737.0430S ribosomal protein S3P OS=Pyrococcus kodakaraen... [more]
RS3_HALMA5.795e-2533.8530S ribosomal protein S3P OS=Haloarcula marismortu... [more]
RS3_METJA1.093e-2335.7530S ribosomal protein S3P OS=Methanocaldococcus ja... [more]
RS3_METTH2.435e-2332.8430S ribosomal protein S3P OS=Methanobacterium ther... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0003B04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186541 ID=CN186541; Name=CN186541; organism=Citrus sinensis; type=EST; length=803bp
TTACAGAAATTGGTTGATAATTATGAAATCTTTAACAATACTGATGACTA
CCTTATATCAAAATTAACACCATGGAGTCTGAGGTATCCTTCCTTAGAAA
CAAAAATGAAAACTAGAGCACTTCAAATACCATTGATAAAATATCAAAGA
AGATGAGACTATACCCCACTTCGGCCTTAAGCCACTTGGATTGGGACCTC
AATATCAGTAGCAACCAATGTTGGCTTGACATACTCCTCTTCATCCTTGG
GTGAGTGGATTGTTACGAGATCAGGTAGAGGGGTAGTAGGACCTTGCTTT
CCATTAGGATCCCAACTAAGCATGATCTTGACCTTAATACCAAGTACACC
CTGTCTCAAAAGAACATGTCTCACAGCAGAGTCAATATATTCATTCACTG
GCTGACCAGAAGAGACCATATATCCATCCTTAAACTTCATTGATTTTGCA
CGTTGTGCCCTCAACTTTCCACTGACAATGACCTCACATCCCTTGGCTCC
ACTTTCCATAATGAACCTCAAGACACCATAGCAAGCCCTGCGAACAGCAA
GCCCACCAAGGAGCTTGTAGCGAAGAGACTCGGCTTGAGCAATGGCACAT
AGTCCTCTATTGTTGACTTTCTCAGCGTACAGCTCCACGCTATTCTCCGG
GAATTTGAACCTTTTCTGCACCACTGATGTCAGCTCTCTAATTCTCCTCC
CTTTCTCACCAAGAACGTTCTGAGTGCGAGTGGCTCGGATGATGATCTCA
GTACGCATGGGAGTTACCCTGACCTCTACTCCAGAATAACCGTCCTCCGC
AAG
back to top