CN186541

Overview
NameCN186541
Unique NameCN186541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11729 contig Csv1_Contig11729:184..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_NATPD (30S ribosomal protein S3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps3p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.153e-23
Identity = 62/193 (32.12%), Postives = 110/193 (56.99%), Query Frame = -1
Query:  225 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVK 803
            L+  GY G+EV  TPM T+I+++A +   V+G+ G+ IR++T+ +++ F   +  V++  ++V+   L A   A+ L   L  G   R+A +  +  IMESGA G E+I+SGK+   R++  KF  GY+  +G+P    +DS V   +++ G +G++VKI+          P   LPD   ++   + E++V+
Sbjct:   25 LSRAGYGGMEVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTTLEEEFGLEDPQVDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIILSGKVTGARSRVEKFNRGYIKHNGEPAESIVDSGVGTAVMKLGTIGVQVKII---------PPEAELPDDFEVYEDIEVEDFVE 206          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_METBF (30S ribosomal protein S3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.153e-23
Identity = 65/183 (35.52%), Postives = 97/183 (53.01%), Query Frame = -1
Query:  243 GYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKD 791
            GY G+E+  TPM T+I+I + +   V+G+ G+ IR+LT  V  R+      ++  A++V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV+E +D      + + G LG KV+I+          P   LPD  T   P +
Sbjct:   29 GYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVAARYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVDEVVDEGFAVAIKKLGTLGCKVRII---------QPGVVLPDSYTTTEPSE 200          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_METM5 (30S ribosomal protein S3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.424e-23
Identity = 63/189 (33.33%), Postives = 101/189 (53.44%), Query Frame = -1
Query:  237 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEE 803
            L   GYS ++++ TP+ T I + A +   V+G KG+ ++ELT  + K +      +E+  ++V N  L        +   L  G+  RR  +  +R +M SGAKG  +IVSGKL  +R+++ KF DGYM   G+P    ++ + +   L+ GV+G+ VKIM          P   LPD +TI S + +E
Sbjct:   24 LVRAGYSHIDLKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLAKEYAVKNPQIEV--KQVENPDLDPAIVGHKIASSLERGMHFRRTAHSAIRRVMGSGAKGVSIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGVVGVTVKIM---------KPDVTLPDEITILSGEIKE 201          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_IGNH4 (30S ribosomal protein S3P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps3p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.424e-23
Identity = 73/189 (38.62%), Postives = 102/189 (53.97%), Query Frame = -1
Query:  225 GYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVK 791
            GYS VE++ TPM T +II A R+  ++G +G+ I+++T V+++ F  P   V +   KV    L A   A  L   L  G   RRA Y  LR IM +GA G +V VSGKLR +RA+  K+  G +  SG  V    D A+ HVLL+ GV G++V I        K+       D V I SP++  E V+
Sbjct:   34 GYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWFGIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKVGVEGVEVII-------SKKSEEERPDDEVRIKSPEEVNEIVQ 213          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_METST (30S ribosomal protein S3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps3p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.083e-23
Identity = 66/194 (34.02%), Postives = 102/194 (52.58%), Query Frame = -1
Query:  228 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPK--DEEEYV 803
            L   GY G++++VTP+ T +I+ A +   V+G  G+ +R +T  ++  F      VE+  ++V+   L     A  +   L  G+  RR  Y ++R IM +GA+G EV +SGK+R  R+   KF +GY+   G+P  +Y+      V L+ GVLGI V+IM          P   LPD + I  P+  D EE V
Sbjct:   24 LERAGYGGMDIQVTPVGTMVIVYAEKPGMVIGRGGKTVRAITKTLKNNFDLENPQVEV--KEVDVPELNPRIMAHKVVAMLQRGMQFRRVAYSIIRRIMSAGAQGVEVTISGKIRGSRSACAKFNEGYIKKCGEPSIKYVKEGFATVQLKPGVLGIYVRIM---------PPEVTLPDNIEISEPEIVDVEEPV 206          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_METAC (30S ribosomal protein S3P OS=Methanosarcina acetivorans GN=rps3p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.251e-23
Identity = 65/190 (34.21%), Postives = 99/190 (52.11%), Query Frame = -1
Query:  234 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEE 803
            L+  GY G+E+  TPM T+I+I + +   V+G+ G+ IR+LT  V  ++      ++  A++V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +D      + + G LG KV+I+          P   LPD   +    + EE
Sbjct:   25 LSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVRII---------QPGVVLPDSYKVRESVEVEE 203          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.208e-22
Identity = 64/184 (34.78%), Postives = 96/184 (52.17%), Query Frame = -1
Query:  252 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHS 803
            L   GY G+E+  TPM T+I ++A +   ++G+ G+ IR  T  +  RFK     +++  ++V    L A   A  L   L  G   R+A    L+ IM+SGA GCEVI++GKL   R +  KF  GY+   G+PV E +D        + G++G+KV+IM          P   LPD +TI +
Sbjct:   25 LERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIRRYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVDVGYARAKKKLGIIGVKVRIM---------PPEAVLPDQITIEA 197          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_METS3 (30S ribosomal protein S3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.515e-22
Identity = 64/188 (34.04%), Postives = 99/188 (52.66%), Query Frame = -1
Query:  240 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 803
            L   GY G++V++TP+ T +++ A R   V+G  G+ +R +T+ ++  F      +E+  ++V+   L     A  +   L  G+  RR  Y  +R IM +GA+G EV +SGK+R  R+   KF +GY+   G+P    ++     V L+ GVLGI V+IM          P T LPD V I  PK E
Sbjct:   24 LERAGYGGMDVQITPLGTMVVVYAERPGMVIGRGGKNVRAITNTLKNDFGLDNPQIEV--KEVSVPELNPKIMAYKIANMLQRGMHFRRVAYSTIRRIMGAGAQGVEVTISGKIRGSRSAVAKFVEGYIKKCGEPSIRLVEEGFATVQLKPGVLGIYVRIM---------PPETVLPDSVEILPPKME 200          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_METMA (30S ribosomal protein S3P OS=Methanosarcina mazei GN=rps3p PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.515e-22
Identity = 64/186 (34.41%), Postives = 97/186 (52.15%), Query Frame = -1
Query:  234 GYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEE 791
            GY G+E+  TPM T+III + +   V+G+ G+ IR+LT  V  ++      ++  A++V    L A   A  L   +  G   R+A +  +R +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +D      + + G LG KV+I+          P   LPD   +    + EE
Sbjct:   29 GYGGMELNRTPMGTQIIIYSEKPGMVIGKAGKVIRKLTRDVATKYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTIRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGHPVEEVVDEGFAVAIKKLGTLGCKVRII---------QPGVVLPDSYKVRESVEIEE 203          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_META3 (30S ribosomal protein S3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps3p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.996e-22
Identity = 61/182 (33.52%), Postives = 98/182 (53.85%), Query Frame = -1
Query:  258 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTI 803
            L   GYS ++V+ TP+ T I + A +   V+G KG+ ++ELT  +    K+  N  ++  +++ +  L A   A+ +   L  G+  RR  +  +R +M  GAKG  VIVSGKL  +R+++ K+ +GYM   G+P  E +D   +   L+ GV+G+ VKIM          P   LPD + I
Sbjct:   24 LPRAGYSHMDVKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETIAT--KYGVNKPQIEVKQIESPDLDAGVVAQKIASSLERGMHFRRVAHSAIRRVMAQGAKGVVVIVSGKLTGERSRTEKYMEGYMKHCGEPSEELVDQCHKIAKLKLGVVGVTVKIM---------PPEITLPDEIVI 194          
The following BLAST results are available for this feature:
BLAST of CN186541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_NATPD4.153e-2332.1230S ribosomal protein S3P OS=Natronomonas pharaoni... [more]
RS3_METBF4.153e-2335.5230S ribosomal protein S3P OS=Methanosarcina barker... [more]
RS3_METM55.424e-2333.3330S ribosomal protein S3P OS=Methanococcus maripal... [more]
RS3_IGNH45.424e-2338.6230S ribosomal protein S3P OS=Ignicoccus hospitalis... [more]
RS3_METST7.083e-2334.0230S ribosomal protein S3P OS=Methanosphaera stadtm... [more]
RS3_METAC9.251e-2334.2130S ribosomal protein S3P OS=Methanosarcina acetiv... [more]
RS3_UNCMA1.208e-2234.7830S ribosomal protein S3P OS=Uncultured methanogen... [more]
RS3_METS33.515e-2234.0430S ribosomal protein S3P OS=Methanobrevibacter sm... [more]
RS3_METMA3.515e-2234.4130S ribosomal protein S3P OS=Methanosarcina mazei ... [more]
RS3_META35.996e-2233.5230S ribosomal protein S3P OS=Methanococcus aeolicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186541 ID=CN186541; Name=CN186541; organism=Citrus sinensis; type=EST; length=803bp
TTACAGAAATTGGTTGATAATTATGAAATCTTTAACAATACTGATGACTA
CCTTATATCAAAATTAACACCATGGAGTCTGAGGTATCCTTCCTTAGAAA
CAAAAATGAAAACTAGAGCACTTCAAATACCATTGATAAAATATCAAAGA
AGATGAGACTATACCCCACTTCGGCCTTAAGCCACTTGGATTGGGACCTC
AATATCAGTAGCAACCAATGTTGGCTTGACATACTCCTCTTCATCCTTGG
GTGAGTGGATTGTTACGAGATCAGGTAGAGGGGTAGTAGGACCTTGCTTT
CCATTAGGATCCCAACTAAGCATGATCTTGACCTTAATACCAAGTACACC
CTGTCTCAAAAGAACATGTCTCACAGCAGAGTCAATATATTCATTCACTG
GCTGACCAGAAGAGACCATATATCCATCCTTAAACTTCATTGATTTTGCA
CGTTGTGCCCTCAACTTTCCACTGACAATGACCTCACATCCCTTGGCTCC
ACTTTCCATAATGAACCTCAAGACACCATAGCAAGCCCTGCGAACAGCAA
GCCCACCAAGGAGCTTGTAGCGAAGAGACTCGGCTTGAGCAATGGCACAT
AGTCCTCTATTGTTGACTTTCTCAGCGTACAGCTCCACGCTATTCTCCGG
GAATTTGAACCTTTTCTGCACCACTGATGTCAGCTCTCTAATTCTCCTCC
CTTTCTCACCAAGAACGTTCTGAGTGCGAGTGGCTCGGATGATGATCTCA
GTACGCATGGGAGTTACCCTGACCTCTACTCCAGAATAACCGTCCTCCGC
AAG
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