CN186541

Overview
NameCN186541
Unique NameCN186541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11729 contig Csv1_Contig11729:184..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_SULAC (30S ribosomal protein S3P OS=Sulfolobus acidocaldarius GN=rps3p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.630e-21
Identity = 62/155 (40.00%), Postives = 90/155 (58.06%), Query Frame = -1
Query:  324 YSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 788
            Y+GVE+  TP+ T +II A R   ++G+ G+ I++L  V++K F      + + A +  N  L A   A  L   L  G   RRA +  +R IM SGA G EVIVSGKL ++RAK  K K+G +  SGQ + + ID A+   +L+ GV G++V I
Sbjct:   31 YAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQLAQVLEKFFGLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVEVVI 183          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_METKA (30S ribosomal protein S3P OS=Methanopyrus kandleri GN=rps3p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.131e-20
Identity = 65/202 (32.18%), Postives = 102/202 (50.50%), Query Frame = -1
Query:  198 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVATDIE 803
            L   GY G+ ++  P  T+II    R    +G +GR IR +   VQ+RF      V +  +++ +  L     A  L   L  G+  RRA YG LR IM +GAKG  +I+SGKL   RA++ KF +G +   G+P +EY+       + + G +G+ V+IM          P   LPD + I  P++ E+ +K  +  ++ E
Sbjct:   32 LGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQERFPLL-GRVSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPGAIGVTVRIM---------PPDVELPDELEIRPPEEVEDELKELIGKSEDE 223          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_HYPBU (30S ribosomal protein S3P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps3p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.131e-20
Identity = 59/189 (31.22%), Postives = 102/189 (53.97%), Query Frame = -1
Query:  225 GYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVK 791
            GY+GV++   P+ T +II A R   ++G +G  IR+L ++ +  F    ++ ++   +V N  L A   A  +   L  G   RR    + R ++ +GA G ++++SGKLR +RA+  K + G + ++G  V   +D AV HV L+ GVLGI+V I+    P+          D V I  P++ +E+++
Sbjct:   30 GYAGVQIIQFPLGTRVIIYAERPAMIIGRRGETIRQLAAIFEHEFGL--SNPQITVRRVENPDLNARVVASRIAVLLERGAYYRRVANVMARRVLNAGAIGVQIVISGKLRTERARYEKVRRGKVYTTGHQVEYMVDRAVMHVTLKPGVLGIEVMIVKPAKPS----------DYVRIKQPEEVKEFIE 206          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_METLZ (30S ribosomal protein S3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps3p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.477e-20
Identity = 56/161 (34.78%), Postives = 93/161 (57.76%), Query Frame = -1
Query:  321 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 803
            L   GY G+++  TP+ T++ I A +   V+G+ G+ +R+LT+ +   +      VE+  ++V N  L A   AE L   L  G   R+A   V+R +M+SGA GCEVI++GKL   RA+  KF +GY+  SG+P    ++      + + G++G++VKI+
Sbjct:   25 LKRAGYGGMDIVRTPVGTQVTIFAEKPGIVIGKGGKLVRQLTTDLSTVYGIESPQVEV--QQVANPNLNAQIMAERLANALERGWYFRKAGTSVIRRVMDSGALGCEVIIAGKLTGARARVQKFVEGYIKHSGEPSESIVEKGYATAIKKLGIIGVQVKIV 183          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_METBU (30S ribosomal protein S3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps3p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.519e-20
Identity = 63/202 (31.19%), Postives = 107/202 (52.97%), Query Frame = -1
Query:  198 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVATDIE 803
            L+  GY G+++  TPM T+I + A +   V+G+ G+ IR+LT  V + +      ++  A++V    L A   A  L   +  G   R+A +  +R +M +GA GCE+++SGKL   R++  K  +GY+  +G+PV++ +D      + + G LG KV+I+          P   LPD   +   K+ EE    +LV+T +E
Sbjct:   25 LSRAGYGGMDINRTPMGTQITVYAEKPGMVIGKAGKVIRKLTRDVDRLYDLDNPQID--AQEVKRPELNAQMMASRLASSIERGWYFRKAGHNTMRAVMNAGALGCEIVISGKLTGSRSRVEKMVNGYIKHAGKPVDDIVDDGFATAVKKLGTLGCKVRII---------HPDAVLPDSYRL---KNAEEL--GSLVSTPVE 210          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_METVS (30S ribosomal protein S3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.290e-20
Identity = 58/189 (30.69%), Postives = 99/189 (52.38%), Query Frame = -1
Query:  237 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEE 803
            L   GYS +E++ TP+ T I + A +   V+G KG+ ++ELT  + + +K     +E+  + +    L        +   L  G+  R+  +  +R +M +GAKG  +I+SGKL  +R+++ KF DGYM   G+P  E +  + +   L+ G++G+ VKIM          P   LPD + I S + +E
Sbjct:   24 LVRAGYSHLELKKTPIGTRITVFAEKPGFVIGRKGKMVKELTDTLTEVYKVENPQIEV--KPLETPDLDPAIVGHKIAASLEKGMHFRKTAHSAVRRVMAAGAKGVAIIISGKLSGERSRTEKFMDGYMKHCGEPAEELVIKSHQLAKLKLGIVGVTVKIM---------RPDVSLPDEIIILSGEIKE 201          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_METB6 (30S ribosomal protein S3P OS=Methanoregula boonei (strain 6A8) GN=rps3p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.612e-20
Identity = 51/161 (31.68%), Postives = 92/161 (57.14%), Query Frame = -1
Query:  321 LAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 803
            L   G+ G+++  TP+ T++ I A +   V+G+ G+ + +LT  + + +      +E+  ++V N    A   AE L   L  G   R+A   ++R +M+SGA GCEV+++GKL   RA++ KF +GY+   G+P N  ++      + + GV+G++VKI+
Sbjct:   25 LKRAGFGGMDIARTPLGTQVTIFAEKPGIVIGKGGKLVHQLTQDLAQNYGVESPQIEV--QQVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVMDSGALGCEVVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVEKGYAIAIKKLGVIGVQVKIV 183          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_SULTO (30S ribosomal protein S3P OS=Sulfolobus tokodaii GN=rps3p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.330e-20
Identity = 66/192 (34.38%), Postives = 107/192 (55.73%), Query Frame = -1
Query:  225 YSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKV---KIMLSWDP-NGKQGPTTPLPDLVTIHSPKDEEEYVK 788
            Y+GVE+  TP+ T +II A R   ++G+ G+ I++L  ++++ F    ++ ++    V N  L A   A  L   L  G   RRA +  +R IM +GA G EVI+SGKL ++RAK  K K+G +  SG  +++ +D AV   +L+ GV G+++   K M S D    ++ P  P  ++VT+ +    EE  K
Sbjct:   31 YAGVEIVKTPIGTRVIIYAGRPALIIGKGGKTIKQLAQMLERYFGL--DNPQITVTSVENPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMNAGALGAEVIISGKLTSERAKYEKLKEGVVYKSGAFLDKIVDRAVAIAMLKPGVYGVEILITKPMKSVDKIELREQPKGPGENMVTVTNVSFIEESQK 220          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_AERPE (30S ribosomal protein S3P OS=Aeropyrum pernix GN=rps3p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.382e-18
Identity = 59/164 (35.98%), Postives = 86/164 (52.44%), Query Frame = -1
Query:  306 EDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDP 797
            E GYS V+V  T + T I I A R   ++G +G  IR L  V Q  F  P   + +  E+  N  L A  QA  +   +  G+  RR  +  +  IM +GA G E+ +SGKL ++RA+  KFK G +  SG  V+E +D A  +  L +GV+G+ V I+    P
Sbjct:   29 EAGYSRVKVVQTSLGTNITIWAERPALIIGRRGATIRRLQEVFQTVFGLPNPRIRV--EQPENPMLDARVQAFRIARSIERGIHFRRVAFAAINRIMSNGALGVEITISGKLTSERARFEKFKAGKVYKSGHKVDELVDRASAYARLPKGVIGVDVIIVKPGKP 190          
BLAST of CN186541 vs. ExPASy Swiss-Prot
Match: RS3_STAMF (30S ribosomal protein S3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.805e-18
Identity = 63/185 (34.05%), Postives = 96/185 (51.89%), Query Frame = -1
Query:  237 GYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEE 791
            GY+G+E+  TP    ++I A     ++G  G  IR+L +++Q  F     +V +    V +  L A   A  +   L   +  RR    +LR +ME+GA G E+I+SGKLR++RA+  K K G +  +G  V+  +D AV   LL++GV G++V I+          P    PD V I S K EE
Sbjct:   32 GYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVVIV---------RPHLKPPDYVEIKSVKPEE 205          
The following BLAST results are available for this feature:
BLAST of CN186541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_SULAC6.630e-2140.0030S ribosomal protein S3P OS=Sulfolobus acidocalda... [more]
RS3_METKA1.131e-2032.1830S ribosomal protein S3P OS=Methanopyrus kandleri... [more]
RS3_HYPBU1.131e-2031.2230S ribosomal protein S3P OS=Hyperthermus butylicu... [more]
RS3_METLZ1.477e-2034.7830S ribosomal protein S3P OS=Methanocorpusculum la... [more]
RS3_METBU2.519e-2031.1930S ribosomal protein S3P OS=Methanococcoides burt... [more]
RS3_METVS3.290e-2030.6930S ribosomal protein S3P OS=Methanococcus vanniel... [more]
RS3_METB65.612e-2031.6830S ribosomal protein S3P OS=Methanoregula boonei ... [more]
RS3_SULTO7.330e-2034.3830S ribosomal protein S3P OS=Sulfolobus tokodaii G... [more]
RS3_AERPE1.382e-1835.9830S ribosomal protein S3P OS=Aeropyrum pernix GN=r... [more]
RS3_STAMF1.805e-1834.0530S ribosomal protein S3P OS=Staphylothermus marin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186541 ID=CN186541; Name=CN186541; organism=Citrus sinensis; type=EST; length=803bp
TTACAGAAATTGGTTGATAATTATGAAATCTTTAACAATACTGATGACTA
CCTTATATCAAAATTAACACCATGGAGTCTGAGGTATCCTTCCTTAGAAA
CAAAAATGAAAACTAGAGCACTTCAAATACCATTGATAAAATATCAAAGA
AGATGAGACTATACCCCACTTCGGCCTTAAGCCACTTGGATTGGGACCTC
AATATCAGTAGCAACCAATGTTGGCTTGACATACTCCTCTTCATCCTTGG
GTGAGTGGATTGTTACGAGATCAGGTAGAGGGGTAGTAGGACCTTGCTTT
CCATTAGGATCCCAACTAAGCATGATCTTGACCTTAATACCAAGTACACC
CTGTCTCAAAAGAACATGTCTCACAGCAGAGTCAATATATTCATTCACTG
GCTGACCAGAAGAGACCATATATCCATCCTTAAACTTCATTGATTTTGCA
CGTTGTGCCCTCAACTTTCCACTGACAATGACCTCACATCCCTTGGCTCC
ACTTTCCATAATGAACCTCAAGACACCATAGCAAGCCCTGCGAACAGCAA
GCCCACCAAGGAGCTTGTAGCGAAGAGACTCGGCTTGAGCAATGGCACAT
AGTCCTCTATTGTTGACTTTCTCAGCGTACAGCTCCACGCTATTCTCCGG
GAATTTGAACCTTTTCTGCACCACTGATGTCAGCTCTCTAATTCTCCTCC
CTTTCTCACCAAGAACGTTCTGAGTGCGAGTGGCTCGGATGATGATCTCA
GTACGCATGGGAGTTACCCTGACCTCTACTCCAGAATAACCGTCCTCCGC
AAG
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