CN186533

Overview
NameCN186533
Unique NameCN186533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186533 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 64/200 (32.00%), Postives = 95/200 (47.50%), Query Frame = 2
Query:  107 NDKKVLLKFKKALNNPYV-LASWNPKTDCCDWYC----VTC-DLSTNRINSLTIFAGDLPGQIPSEVGDLPYLETLMFHKLPSLTGPIQPAIAK-LKNLKTLRISWTNISGPVPDFISQLTNLTFLELSFNNLSGTIPSSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPDLYLSHNQLSGKIPASLGSMDFNTIDL 685
            +D   L   K +L +P   L+SW+         C    V+C +   NRI SL + +  L G+IP  +     L++L       L+G I   I   L  L TL +S   + G +P  I +   L  L LS N LSG+IPS LS+L +L  L L  N L+G+IP     F G   D +  +N L GK  +  G+++   + +
Sbjct:   26 DDVLCLQGLKNSLIDPSSRLSSWSFPNSSASSICKLTGVSCWNEKENRIISLQLQSMQLAGEIPESLKLCRSLQSLDLSG-NDLSGSIPSQICSWLPYLVTLDLSGNKLGGSIPTQIVECKFLNALILSDNKLSGSIPSQLSRLDRLRRLSLAGNDLSGTIPSELARFGG---DDFSGNNGLCGKPLSRCGALNGRNLSI 221          
BLAST of CN186533 vs. ExPASy Swiss-Prot
Match: Y1143_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 61/205 (29.76%), Postives = 93/205 (45.37%), Query Frame = 2
Query:  107 NDKKVLLKFKKALNNPYVLASWNPKTDCC-----DWYCVTCDLSTNRINSLTIFAG---DLPGQIPSEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQL-TNLTFLELSFNNLSGTIPSSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPDLYLSHNQLSGKIPASLGSMDFNTIDLSRN 694
            ++ + LL+ +K L  P  L SW+  T+ C       + + C      +  LT+       LPG+  S+                     +   + KL NLKTL +    ISGP+P  I +L ++L  L LS N +SG IP  +S L+ L +L L  N   GS+P+  G    +  +L L  N+L  ++  SL S +  TI L  N
Sbjct:   32 SESRTLLEIQKHLQYPPTLRSWSNWTNFCYLPSSPSFKILC--FNGHVTELTVTGNRTVKLPGRFSSD--------------------SLFTVLTKLSNLKTLSLVSLGISGPLPSQIIRLSSSLQSLNLSSNFISGNIPKEISSLKNLRSLVLANNLFNGSVPDLRG--LSNLQELNLGGNKLGPEVVPSLAS-NLITISLKNN 211          
BLAST of CN186533 vs. ExPASy Swiss-Prot
Match: Y4312_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g31250 OS=Arabidopsis thaliana GN=At4g31250 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 59/196 (30.10%), Postives = 90/196 (45.92%), Query Frame = 2
Query:  110 DKKVLLKFKKALNNPYVLASWNPKTDCCD--------WYCVTCDLSTNRINSLTIFAGDLPGQIPSE-VGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVP-DFISQLTNLTFLELSFNNLSGTIPSSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPDLYLSHNQLSGKIPASLGSMD 667
            D   LLKFK +L N   L  W+     C         W  V C  S   + +L +    L G++  + +G +  L+++ F +     G I   I  L +L  L ++    +G +  D  S +  L  + L  N  SG IP SL KL KL  L+L+ N  TG IP        +   + +++NQL G+IP +LG M+
Sbjct:   29 DADALLKFKSSLVNASSLGGWDSGEPPCSGDKGSDSKWKGVMC--SNGSVFALRLENMSLSGELDVQALGSIRGLKSISFMR-NHFEGKIPRGIDGLVSLAHLYLAHNQFTGEIDGDLFSGMKALLKVHLEGNRFSGEIPESLGKLPKLTELNLEDNMFTGKIP---AFKQKNLVTVNVANNQLEGRIPLTLGLMN 218          
The following BLAST results are available for this feature:
BLAST of CN186533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
Y1719_ARATH3.823e-1132.00Probable inactive receptor kinase At1g27190 OS=Ara... [more]
Y1143_ARATH3.823e-1129.76Probable LRR receptor-like serine/threonine-protei... [more]
Y4312_ARATH8.517e-1130.10Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003A22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186533 ID=CN186533; Name=CN186533; organism=Citrus sinensis; type=EST; length=704bp
AGTCAGCTTCCCTACTCTTCAAAACATGAGCAACACGTCACTATTGTCTC
TGATCTTCATCTTGTCCCTTTTCATCTCCCCTTCACTCTCAGACCTCTGC
AACCCAAATGACAAAAAAGTGCTTCTCAAATTCAAAAAAGCTTTGAACAA
CCCTTACGTTCTAGCTTCTTGGAACCCAAAAACTGACTGCTGTGACTGGT
ACTGCGTCACATGCGATCTCTCCACTAACCGCATCAATTCTCTCACCATC
TTCGCCGGAGATCTCCCCGGCCAGATCCCCTCCGAAGTTGGTGATCTTCC
TTACCTCGAAACCCTAATGTTTCACAAGCTACCCAGCCTCACTGGCCCCA
TACAACCCGCCATTGCCAAGCTCAAAAACCTGAAGACGCTACGTATTAGC
TGGACAAACATTTCTGGGCCGGTTCCTGATTTTATCAGCCAACTCACCAA
CTTAACATTCTTGGAGCTTTCATTTAACAATCTTTCTGGGACGATCCCAA
GTTCACTTTCGAAGCTGCAGAAGCTTGGCGCTCTTCATTTGGACAGAAAC
AAGCTTACGGGTTCAATCCCTGAGTCTTTTGGTACATTCACCGGGAGTAC
ACCCGATCTTTACTTGTCACATAACCAGCTCTCTGGCAAAATCCCTGCCT
CTTTAGGCAGCATGGATTTTAACACCATTGACTTGTCCAGGAACAAGCTT
GAAG
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