CN186521

Overview
NameCN186521
Unique NameCN186521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186521_ssr3 microsatellite CN186521_ssr3:3..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8429 contig Csv1_Contig8429:892..1549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186521 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.947e-20
Identity = 58/161 (36.02%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 591
            FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T + T+    TW ++L R    +I I L GNK D+ N R V+ ++   +   N L + E SAK+  N    FL +A+KL
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 181          
BLAST of CN186521 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.947e-20
Identity = 58/161 (36.02%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 591
            FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE++  L   YY   Q AI+++D+T + T+    TW ++L R    +I I L GNK D+ N R V+ ++   +   N L + E SAK+  N    FL +A+KL
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 181          
BLAST of CN186521 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.733e-20
Identity = 58/176 (32.95%), Postives = 96/176 (54.55%), Query Frame = 1
Query:   97 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDPNLH 612
            + VDY  FK++++GD   GKT  V+   +G + +  + TIGV+        +  K++   WDTAGQE+F  +   YY     AII +D+T R T+++VP W  ++ +    N+ I+L GNK D+ + R V  +      +K   L   E SAK + N ++ F+ +A++L    +LH
Sbjct:   12 ENVDY-LFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESRNIDEVFVLMAKELIARNSLH 186          
BLAST of CN186521 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.733e-20
Identity = 53/161 (32.92%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 591
            FKL+++GD G GKT  + R     F   +  TIG++        +  KI+   WDTAGQE+F  +   YY      ++++D+T   +++N+  W R++     E++  +L GNK D+++++V  K+K     R+  ++++E SAK+N N EK FL LA  +
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of CN186521 vs. ExPASy Swiss-Prot
Match: RAB7_VIGAC (Ras-related protein Rab7 OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.793e-20
Identity = 52/188 (27.66%), Postives = 96/188 (51.06%), Query Frame = 1
Query:  121 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG---DPNLHFVESPALAPPE 645
            K++++GD G GKT+ + +++  +F ++Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C ++ +DV    ++  +  WH +  +        + P +L GNK+D+    +R V  K+       K N+ Y+E SAK ++N +  FL +A+       + +++F   P  A PE
Sbjct:   10 KVIVLGDTGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLAYDVNVMKSFDTLDNWHEEFLKQANPPDPRSFPFILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDFNVDAAFLCIAKAALANEHEQDIYFQGIPEAAVPE 197          
BLAST of CN186521 vs. ExPASy Swiss-Prot
Match: RAB18_DICDI (Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.793e-20
Identity = 57/165 (34.55%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 603
            +K++++GD   GKT+ VKR     F++    TIGVE    +   +  K+    WDTAGQEKF  L   YY      I+ +DVT R ++ N+  W  ++       N+  +L GNK+D +NR+V  ++   F +KK + + E SAKS    ++ F  LA+K+   P
Sbjct:    7 YKVLLIGDSDVGKTSIVKRFSDDTFDEDLLCTIGVEFKMKEVKVDGKKVDLCIWDTAGQEKFRALISSYYRGAHGIILTYDVTKRESFDNLNYWLNEVENFANRSNLVKLLVGNKIDKENREVTREEGAEFAKKKAMLFIECSAKSKIGIQQAFEELAQKIIEIP 171          
BLAST of CN186521 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.148e-19
Identity = 53/153 (34.64%), Postives = 82/153 (53.59%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 570
            FKL+I+GD G GK++ + R     F   Y  TIGV+        N  K++   WDTAGQE+F  +   YY      I+++DVT+  ++ NV  W  ++ + C+++  +L GNK D   R+V   +    F  +  +Q +E SAK N N E+ F
Sbjct:    9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 161          
BLAST of CN186521 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.148e-19
Identity = 53/153 (34.64%), Postives = 82/153 (53.59%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 570
            FKL+I+GD G GK++ + R     F   Y  TIGV+        N  K++   WDTAGQE+F  +   YY      I+++DVT+  ++ NV  W  ++ + C+++  +L GNK D   R+V   +    F  +  +Q +E SAK N N E+ F
Sbjct:    9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 161          
BLAST of CN186521 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.148e-19
Identity = 53/153 (34.64%), Postives = 82/153 (53.59%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 570
            FKL+I+GD G GK++ + R     F   Y  TIGV+        N  K++   WDTAGQE+F  +   YY      I+++DVT+  ++ NV  W  ++ + C+++  +L GNK D   R+V   +    F  +  +Q +E SAK N N E+ F
Sbjct:    9 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 161          
BLAST of CN186521 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.148e-19
Identity = 56/165 (33.94%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  118 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK------NLQYYEISAKSNYNFEKPFLYLARKL 591
            FKL+++GD G GK+  + R     + + +  TIGV+        N   I+   WDTAGQE+F  +   YY      I+++DVT +LT++NV  W +++ R  CEN+  +L GNK D+    V  K V F+  K       + + E SAK + N E+ F+ +A ++
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDL----VAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEI 169          
The following BLAST results are available for this feature:
BLAST of CN186521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5B_MOUSE3.947e-2036.02Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]
RAB5B_HUMAN3.947e-2036.02Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]
RAB19_RAT6.733e-2032.95Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]
RAB10_DISOM6.733e-2032.92Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RAB7_VIGAC8.793e-2027.66Ras-related protein Rab7 OS=Vigna aconitifolia PE=... [more]
RAB18_DICDI8.793e-2034.55Ras-related protein Rab-18 OS=Dictyostelium discoi... [more]
RAB35_RAT1.148e-1934.64Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE1.148e-1934.64Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN1.148e-1934.64Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]
RAB1A_DICDI1.148e-1933.94Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003A14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186521 ID=CN186521; Name=CN186521; organism=Citrus sinensis; type=EST; length=658bp
ATTCTCTCTCTCTCTCTCTCGCTCACTTCTGTGTTCAGACCGCGAACTTC
GTATTCTTTCGCACACAGTACTCAACTCATGGCTCTGCCAAGTCAGCAAA
CTGTTGATTACCCGAGCTTCAAACTCGTCATAGTCGGCGACGGTGGCACT
GGGAAGACTACCTTTGTGAAGAGGCATCTGACTGGGGAGTTTGAGAAGAA
GTATGAACCAACTATTGGTGTGGAGGTTCATCCGTTGGATTTCTTTACAA
ATTGTGGCAAAATCCGTTTCTACTGCTGGGACACTGCTGGCCAGGAAAAG
TTTGGTGGTCTTAGAGATGGTTATTACATCCATGGGCAATGTGCCATCAT
TATGTTTGATGTTACTGCCCGATTGACATACAAGAATGTTCCCACTTGGC
ACCGTGATCTTTGCCGGGTGTGTGAAAATATACCGATTGTTCTCTGTGGG
AACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGCAGGTTACCTT
CCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCCAAGAGCAACT
ACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCTTGCTGGGGAC
CCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGCTCCTCCAGAAGTACA
GATTGACT
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