CN186516

Overview
NameCN186516
Unique NameCN186516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1556 contig Csv1_Contig1556:39..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186516 vs. ExPASy Swiss-Prot
Match: PLEC1_RAT (Plectin-1 OS=Rattus norvegicus GN=Plec1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.229e-22
Identity = 54/102 (52.94%), Postives = 72/102 (70.59%), Query Frame = 2 
Query:   53 IAIMIIPEKNRREISKYLFQEGVCYAKKDYN-LAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 352
            +A M++P    R I + LF+EGV  AKKD    + HP +  V NLQV++ M S K++  VRETFAW H+YWYLTNEGI+ LR YL+LP EIVPA+L++  +P
Sbjct:    2 VAGMLMPLDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMTSLKARGLVRETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRP 103
[Close]
BLAST of CN186516 vs. ExPASy Swiss-Prot
Match: PLEC1_MOUSE (Plectin-1 OS=Mus musculus GN=Plec1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.229e-22
Identity = 54/102 (52.94%), Postives = 72/102 (70.59%), Query Frame = 2 
Query:   53 IAIMIIPEKNRREISKYLFQEGVCYAKKDYN-LAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 352
            +A M++P    R I + LF+EGV  AKKD    + HP +  V NLQV++ M S K++  VRETFAW H+YWYLTNEGI+ LR YL+LP EIVPA+L++  +P
Sbjct:    2 VAGMLMPLDRLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLKARGLVRETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRP 103
[Close]
BLAST of CN186516 vs. ExPASy Swiss-Prot
Match: PLEC1_HUMAN (Plectin-1 OS=Homo sapiens GN=PLEC1 PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.165e-21
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 2 
Query:   53 IAIMIIPEKNRREISKYLFQEGVCYAKKDYN-LAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 352
            +A M++P    R I + LF+EGV  AKKD    + HP +  V NLQV++ M S +++  VRETFAW H+YWYLTNEGI  LR YL+LP EIVPA+L++  +P
Sbjct:    2 VAGMLMPRDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLRARGLVRETFAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRP 103
The following BLAST results are available for this feature:
BLAST of CN186516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PLEC1_RAT5.229e-2252.94Plectin-1 OS=Rattus norvegicus GN=Plec1 PE=1 SV=2[more]
PLEC1_MOUSE5.229e-2252.94Plectin-1 OS=Mus musculus GN=Plec1 PE=1 SV=2[more]
PLEC1_HUMAN1.165e-2151.96Plectin-1 OS=Homo sapiens GN=PLEC1 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003A10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186516 ID=CN186516; Name=CN186516; organism=Citrus sinensis; type=EST; length=740bp
AGTGTGAGATTTGTTCTTCTTTGCCGCCTCTTTTCTCAATCATCACCTCT
TCATCGCAATCATGATCATTCCAGAGAAGAACCGCCGTGAGATCTCCAAG
TACCTCTTCCAAGAGGGTGTGTGCTACGCAAAGAAAGACTACAATTTGGC
AAAGCACCCAGAAATCGATGTCCCGAATCTACAGGTGATTAAGTTGATGC
AGAGCTTCAAGTCAAAGGAGTACGTCCGCGAGACCTTTGCCTGGATGCAT
TATTACTGGTACCTTACCAATGAAGGCATTGAGTTCCTCAGAGGTTACCT
CAATCTTCCTTCTGAAATTGTCCCCGCCACTTTGAAGAAACAGGCCAAGC
CCGCAGGTGGTCGTCCTTTTGGTGGCCCAGGGGGTGATCGCCCACGTGGC
CCACCACGCTTCGATGGTGGAGAGAGAAGATTTGGTGACCGAGATGGATA
CCGCGGAGCTCCACGAGGAGCAGGTGGTGATTTTGGTGACAAGGGTGGAG
CTCCTGCTGACTATCAGCCATCTTTCAGGGGCCCTGGTGGAAGGCCAGGG
TTTGGTCGTGGCGGCGGTGGTTTTGGTGCAGGGTCTGCAAGCTCAAATCT
TCCTTGAGAGATGAGTTCTGCATCTTGAGGGATTTAGGAATTTTGGTTAC
AAGATTGCTGAGTGTATAGCAGTCTTTTTTTGATTGCTGCATTGTTTGGG
ACTGGTTGTGGGGATTTTTTATATATATGTATTTAATTTT
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