CN186510

Overview
NameCN186510
Unique NameCN186510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 318.546 bits (815), Expect = 2.139e-86
Identity = 158/204 (77.45%), Postives = 169/204 (82.84%), Query Frame = 1
Query:   94 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE 207          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_MESAU (Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3)

HSP 1 Score: 318.546 bits (815), Expect = 2.139e-86
Identity = 158/204 (77.45%), Postives = 169/204 (82.84%), Query Frame = 1
Query:   94 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE 207          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_HUMAN (Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3)

HSP 1 Score: 318.546 bits (815), Expect = 2.139e-86
Identity = 158/204 (77.45%), Postives = 169/204 (82.84%), Query Frame = 1
Query:   94 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE 207          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_BOVIN (Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 318.546 bits (815), Expect = 2.139e-86
Identity = 158/204 (77.45%), Postives = 169/204 (82.84%), Query Frame = 1
Query:   94 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKLYNKVPPNGLV+Y GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAE 207          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_PODAN (Eukaryotic peptide chain release factor subunit 1 OS=Podospora anserina GN=SU2 PE=3 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.386e-85
Identity = 155/204 (75.98%), Postives = 170/204 (83.33%), Query Frame = 1
Query:   94 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            +  E +KN                RGNGTSMISLI+PP+DQ+SR  KML +E+GTASNIKSRVNRQSVL AITS QQRLKLYNKVPPNGLV+Y G I+T +GKE+KV IDFEPF+PIN SLYLCDNKFHTEAL ELLESD KFGFIVMDGNG LFGTLSGNTR+++HKFSVDLPKKHGRGGQSALRFARLR EKRHNYVRK AE
Sbjct:    5 NANEAEKNIEIWKVKKLIKRLEAARGNGTSMISLIIPPKDQISRAAKMLAEEYGTASNIKSRVNRQSVLSAITSTQQRLKLYNKVPPNGLVVYCGEILTSEGKERKVNIDFEPFKPINTSLYLCDNKFHTEALAELLESDQKFGFIVMDGNGALFGTLSGNTRDIVHKFSVDLPKKHGRGGQSALRFARLREEKRHNYVRKVAE 208          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_CAEEL (Eukaryotic peptide chain release factor subunit 1 OS=Caenorhabditis elegans GN=erf-1 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.434e-82
Identity = 148/180 (82.22%), Postives = 163/180 (90.56%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            RGNGTSMISLI+PP+DQV+R+ +ML +E+GTASNIKSRVNR SVLGAITS Q RLKLYNKVPPNGLV+Y GTI+TD+GKEKKV IDFEPF+ IN SLYLCDNKFHTEAL  LL  D+KFGFI+MDGNG LFGTL GNTREVLHKF+VDLPKKHGRGGQSA+RFARLR EKRHNYVRK AE
Sbjct:   36 RGNGTSMISLIIPPKDQVARIQRMLAEEYGTASNIKSRVNRLSVLGAITSVQGRLKLYNKVPPNGLVVYCGTIMTDEGKEKKVNIDFEPFKAINTSLYLCDNKFHTEALQGLLADDNKFGFIIMDGNGCLFGTLQGNTREVLHKFTVDLPKKHGRGGQSAVRFARLRNEKRHNYVRKVAE 215          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_CRYHO (Eukaryotic peptide chain release factor subunit 1 OS=Cryptosporidium hominis GN=erf1 PE=3 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.484e-79
Identity = 138/180 (76.67%), Postives = 163/180 (90.56%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            RGNGTSMISL++ P+D++SR++KML DE+GTASNIKSRVNR SVL AITS QQRLKLYN+ P NGLV+Y GT++T+DGKEKKV IDFEPF+PIN SLYLCDNKFH +AL ELLE+DDKFGFI++DGNG L+G + G++REVL +F+VDLPKKHGRGGQSALRFARLRMEKRHNY+RK AE
Sbjct:   24 RGNGTSMISLVIKPKDEISRISKMLADEYGTASNIKSRVNRLSVLSAITSTQQRLKLYNRTPQNGLVVYCGTLITEDGKEKKVNIDFEPFKPINTSLYLCDNKFHVDALKELLETDDKFGFIIVDGNGALYGVVQGSSREVLLRFNVDLPKKHGRGGQSALRFARLRMEKRHNYLRKVAE 203          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_DICDI (Eukaryotic peptide chain release factor subunit 1 OS=Dictyostelium discoideum GN=erf1 PE=2 SV=2)

HSP 1 Score: 295.434 bits (755), Expect = 1.939e-79
Identity = 148/204 (72.55%), Postives = 163/204 (79.90%), Query Frame = 1
Query:   94 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            D Q  DK                 RGNGTSMISLI+ P DQ+++V KML +E+GTASNIKSRVNR SVLGAITSAQQRLKLY KVP NGLV+Y GT+VTD+GKEK V ID EPF+PIN SLYLCDNKFHT  L ELLESD+KFGFIV+DGNG LFG L G+TR VLHK +VDLPKKHGRGGQSALRFARLRMEKRHNYVRK +E
Sbjct:    6 DQQNADKQVEQWKIKKLIKNLEAARGNGTSMISLIIRPGDQIAKVNKMLAEEYGTASNIKSRVNRLSVLGAITSAQQRLKLYTKVPDNGLVIYCGTMVTDEGKEKPVRIDIEPFKPINTSLYLCDNKFHTAPLGELLESDEKFGFIVVDGNGALFGLLCGSTRTVLHKITVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVSE 209          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_YEAST (Eukaryotic peptide chain release factor subunit 1 OS=Saccharomyces cerevisiae GN=SUP1 PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.257e-78
Identity = 144/201 (71.64%), Postives = 162/201 (80.60%), Query Frame = 1
Query:  103 ETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            E +KN                RGNGTSMISL++PP+  +    KML DE+GTASNIKSRVNR SVL AITS QQ+LKLYN +P NGLVLY G I+T+DGKEKKVT D EP++PIN SLYLCDNKFHTE L+ELL++DDKFGFIVMDG GTLFG++SGNTR VLHKF+VDLPKKHGRGGQSALRFARLR EKRHNYVRK AE
Sbjct:    4 EVEKNIEIWKVKKLVQSLEKARGNGTSMISLVIPPKGLIPLYQKMLTDEYGTASNIKSRVNRLSVLSAITSTQQKLKLYNTLPKNGLVLYCGDIITEDGKEKKVTFDIEPYKPINTSLYLCDNKFHTEVLSELLQADDKFGFIVMDGQGTLFGSVSGNTRTVLHKFTVDLPKKHGRGGQSALRFARLREEKRHNYVRKVAE 204          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_SCHPO (Eukaryotic peptide chain release factor subunit 1 OS=Schizosaccharomyces pombe GN=sup45 PE=1 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.346e-72
Identity = 131/179 (73.18%), Postives = 154/179 (86.03%), Query Frame = 1
Query:  169 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            GNGTSMI+LI+PP +Q+SR + ML +E+GTASNIKSRVNR SVL AITS ++RLKLYNKVP NGLV+Y G ++ +  K +K+ IDFEPF+PIN S YLCDNKFHTEAL ELLESD +FGFIVMDG+ TL+G +SG+ REVL +F+VDLPKKHGRGGQSALRFARLR EKRHNYVRK AE
Sbjct:   26 GNGTSMITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGSAREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAE 204          
The following BLAST results are available for this feature:
BLAST of CN186510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_MOUSE2.139e-8677.45Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MESAU2.139e-8677.45Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_HUMAN2.139e-8677.45Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BOVIN2.139e-8677.45Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PODAN1.386e-8575.98Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CAEEL1.434e-8282.22Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CRYHO1.484e-7976.67Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DICDI1.939e-7972.55Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_YEAST1.257e-7871.64Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_SCHPO1.346e-7273.18Eukaryotic peptide chain release factor subunit 1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0003A07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186510 ID=CN186510; Name=CN186510; organism=Citrus sinensis; type=EST; length=707bp
AGTATTCCATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCT
TTTATCACTGTTTTAGAGTTACTGCATCCACTTTACAATGGCAGATGGTC
AGGAGACTGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAA
GCACTTGAAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCAT
GCCTCCTCGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGT
TTGGAACTGCTTCAAACATCAAAAGCAGGGTTAATCGTCAATCTGTATTG
GGTGCAATCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAGGTCCC
TCCCAATGGGCTTGTGCTGTACACGGGAACAATTGTTACTGACGATGGGA
AGGAAAAGAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTAATGCA
TCTCTTTACCTCTGTGACAATAAGTTTCACACTGAAGCTCTGAATGAACT
GTTGGAGTCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAATGGAA
CCCTTTTTGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACAAGTTC
AGTGTTGACCTTCCAAAGAAACATGGAAGAGGTGGACAGTCAGCCCTTCG
GTTTGCCCGACTTCGAATGGAGAAGCGCCATAACTATGTGAGGAAAACAG
CTGAACT
back to top