CN186510

Overview
NameCN186510
Unique NameCN186510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2092 contig Csv1_Contig2092:47..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_BLEAM (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma americanum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.540e-68
Identity = 126/206 (61.17%), Postives = 160/206 (77.67%), Query Frame = 1
Query:   94 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYN-KVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            +G E  +N                RGNGTS+ISLI+PPR+Q+  + KM+ +E+G +SNIKSR+ RQ+V  A+TS ++RLKLYN ++P NGL+LY G ++ ++G  EKK TIDF+P+R IN +LY+CDNKFHT+ L +LL  DDKFGFI++DGNGTLFGTL GNT+EVLHKFSVDLPKKH RGGQSALRFARLRME R+NY+RK AE
Sbjct:    2 EGDELTQNIEQWKIKRLIDNLDKARGNGTSLISLIIPPREQLPIINKMITEEYGKSSNIKSRIVRQAVQSALTSTKERLKLYNNRLPANGLILYCGEVINEEGVCEKKYTIDFQPYRAINTTLYICDNKFHTQPLKDLLVMDDKFGFIIIDGNGTLFGTLQGNTKEVLHKFSVDLPKKHRRGGQSALRFARLRMESRNNYLRKVAE 207          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_BLEMU (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma musculus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.851e-68
Identity = 125/206 (60.68%), Postives = 159/206 (77.18%), Query Frame = 1
Query:   94 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYN-KVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            +G E  +N                RGNGTS+ISLI+PPR+Q+  + KM+ +E+G +SNIKSR+ RQ+V  A+TS ++RLKLYN ++P NGL+LY G ++ ++G  EKK TIDF+P+R IN +LY+CDNKFHT+ L +LL  DDKFGFI++DGNG LFGTL GNTREVLHKFSVDLPKKH RGGQSALRF+RLRME R+NY+RK AE
Sbjct:    2 EGDELTQNIEQWKIKRLIDNLDKARGNGTSLISLIIPPREQLPIINKMITEEYGKSSNIKSRIVRQAVQSALTSTKERLKLYNNRLPANGLILYCGEVINEEGVCEKKYTIDFQPYRAINTTLYICDNKFHTQPLKDLLVMDDKFGFIIIDGNGALFGTLQGNTREVLHKFSVDLPKKHRRGGQSALRFSRLRMESRNNYLRKVAE 207          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_TETTH (Eukaryotic peptide chain release factor subunit 1 OS=Tetrahymena thermophila GN=ERF1 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.550e-65
Identity = 115/180 (63.89%), Postives = 145/180 (80.56%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            RG+GTSM+SLI+PP+ Q++  TK++ DEF  A+NIK RVNRQSV  A+ SA QRLKLY + P NGL+LY G ++ ++GKE K+ IDFEP++PIN SLY CD+KFH + L  LLE+D  FGFIVMDG G L+  L GNT+ VL+KFSV+LPKKHGRGGQS++RFARLR+EKRHNY+RK  E
Sbjct:   27 RGSGTSMVSLIIPPKKQINDSTKLISDEFSKATNIKDRVNRQSVQDAMVSALQRLKLYQRTPNNGLILYCGKVLNEEGKEIKLLIDFEPYKPINTSLYFCDSKFHVDELGSLLETDPPFGFIVMDGQGALYANLQGNTKTVLNKFSVELPKKHGRGGQSSVRFARLRVEKRHNYLRKVCE 206          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_TRYBB (Eukaryotic peptide chain release factor subunit 1 OS=Trypanosoma brucei brucei GN=ERF1 PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.948e-63
Identity = 112/180 (62.22%), Postives = 147/180 (81.67%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            RG GTS+IS+ M P++Q+S +   L +E+GTASNIKS  N+ SV  AIT++  RLK YN++PPNGL+LY GT++T + KEKK+T+D EPF+P++ SLYLCDNKFHTE L+ +LESD+KFGFIV+DG+GT + TL G+ +E L  F+V+LPKKHGRGGQS  RFAR+RME+RHNY+RK AE
Sbjct:   29 RGMGTSVISIYMTPKEQISGMVTKLNNEYGTASNIKSHTNKLSVQSAITASLGRLKQYNRLPPNGLLLYCGTVLTAENKEKKLTLDIEPFKPVSRSLYLCDNKFHTEELHRMLESDEKFGFIVVDGSGTTYATLCGSVKEKLSSFTVELPKKHGRGGQSKNRFARIRMERRHNYLRKVAE 208          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_DIDNA (Eukaryotic peptide chain release factor subunit 1 OS=Didinium nasutum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.322e-63
Identity = 115/180 (63.89%), Postives = 146/180 (81.11%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            +G+GTSMI+LI+  +DQ++   +ML +E G ASNIKSRV RQ+V  A+TS  ++LKLYNK PPNGLV++ G +  +DG EK + ID EPF+PIN +LY CD+ FHTE + +LLE +DKFGFI+MDGNG+LFGTL G+TR VL KF+VDLPKKHGRGGQSA RFAR+R+EKR NY+RK AE
Sbjct:   30 KGSGTSMITLIINFKDQINIHARMLAEEVGKASNIKSRVTRQNVTDALTSTLEKLKLYNKTPPNGLVIFCGLVQQEDGGEKMIKIDLEPFKPINTTLYKCDSVFHTEEVRKLLEDNDKFGFIIMDGNGSLFGTLQGSTRTVLLKFNVDLPKKHGRGGQSANRFARIRIEKRRNYLRKVAE 209          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_GIALA (Eukaryotic peptide chain release factor subunit 1 OS=Giardia lamblia GN=ERF1 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.667e-63
Identity = 117/179 (65.36%), Postives = 144/179 (80.45%), Query Frame = 1
Query:  169 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            G+GTS+ISL++PP +Q+S VT ML +E+GTASNIKSRVN+ +VL AITSA  RLKLYN++PPNGL +Y G I  +DGK  KV ID+ P++PI+  +YLCD+KFHTE L ELL +DD FGFI+MDG  TL  TLSG  R +L + +VDLPKKHGRGGQS++RFARLR E RHNYVRK AE
Sbjct:   35 GSGTSVISLLIPPGEQLSSVTGMLTNEYGTASNIKSRVNKNAVLSAITSAMSRLKLYNRLPPNGLAVYCGEI-EEDGKNTKVVIDYTPYKPISNFIYLCDSKFHTEHLRELLTNDDTFGFIIMDGKETLMATLSGTVRTILDRSTVDLPKKHGRGGQSSVRFARLREEARHNYVRKVAE 212          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_OXYTR (Eukaryotic peptide chain release factor subunit 1 OS=Oxytricha trifallax GN=ERF1 PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.304e-61
Identity = 111/181 (61.33%), Postives = 139/181 (76.80%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            +GNGTSM+SLI+PP+D +++  K+L  E   A NIKSR+ +QSV+ AITS +++LKLY + P NGL LY G I  +DGK EKK+  DFEPFRPIN  LY C  KF TE L  LL  DDKFGFI++DGNG L+ TL GN+RE+L K +V+LPKKH +GGQS++RFARLR EKRHNY+RK AE
Sbjct:   32 KGNGTSMVSLIIPPKDDINKYGKLLTGEMSAAQNIKSRITKQSVVTAITSTKEKLKLYKQTPTNGLCLYCGVIYMEDGKTEKKINFDFEPFRPINQFLYFCGGKFQTEPLLSLLADDDKFGFIIVDGNGALYATLQGNSREILQKITVELPKKHRKGGQSSVRFARLREEKRHNYLRKVAE 212          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_STYMT (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia mytilus GN=ERF1 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.048e-61
Identity = 109/181 (60.22%), Postives = 140/181 (77.35%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            +GNGTSM+SLI+PP++ +++  K+L  E   A NIKSR+ RQSV+ AITS +++LKLY + P NGL +Y G I+ +DGK EKK+  DFEPFRPIN  +Y C  KF TE L  LL  DDKFGFI++DGNG L+ TL GN+RE+L K +V+LPKKH +GGQS++RFARLR EKRHNY+RK AE
Sbjct:   32 KGNGTSMVSLIIPPKEDINKSGKLLVGELSAAQNIKSRITRQSVITAITSTKEKLKLYRQTPTNGLCIYCGVILMEDGKTEKKINFDFEPFRPINQFMYFCGGKFQTEPLTTLLADDDKFGFIIVDGNGALYATLQGNSREILQKITVELPKKHRKGGQSSVRFARLREEKRHNYLRKVAE 212          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_STYLE (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia lemnae GN=ERF1 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.048e-61
Identity = 109/181 (60.22%), Postives = 140/181 (77.35%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            +GNGTSM+SLI+PP++ +++  K+L  E   A NIKSR+ RQSV+ AITS +++LKLY + P NGL +Y G I+ +DGK EKK+  DFEPFRPIN  +Y C  KF TE L  LL  DDKFGFI++DGNG L+ TL GN+RE+L K +V+LPKKH +GGQS++RFARLR EKRHNY+RK AE
Sbjct:   32 KGNGTSMVSLIIPPKEDINKSGKLLVGELSAAQNIKSRITRQSVITAITSTKEKLKLYRQTPTNGLCIYCGVILMEDGKTEKKINFDFEPFRPINQFMYFCGGKFQTEPLTTLLADDDKFGFIIVDGNGALYATLQGNSREILQKITVELPKKHRKGGQSSVRFARLREEKRHNYLRKVAE 212          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_DILMA (Eukaryotic peptide chain release factor subunit 1 OS=Dileptus margaritifer GN=eRF1 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.633e-60
Identity = 111/180 (61.67%), Postives = 139/180 (77.22%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            +G+GTSMISLI+  +DQ++   KML DE G ASNIKSRV RQ+V  A+TS  ++LKLYNK P NGL++Y G     D  EK   ID EPF+PIN SLY CD+ FHTE + +LLE +D+FGF++MDGNG+LFG++ G TR V+ KF VDLPKKHGRGGQS+ RFAR+R E+RHNY+RK AE
Sbjct:   30 KGSGTSMISLIINYKDQINPFMKMLVDEVGKASNIKSRVTRQNVTDALTSTMEKLKLYNKTPNNGLIIYCGLASEGDSGEKMFKIDMEPFKPINTSLYRCDSVFHTEEVKKLLEDNDRFGFLIMDGNGSLFGSVQGATRTVIQKFLVDLPKKHGRGGQSSNRFARIRTERRHNYLRKVAE 209          
The following BLAST results are available for this feature:
BLAST of CN186510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_BLEAM1.540e-6861.17Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BLEMU5.851e-6860.68Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TETTH3.550e-6563.89Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TRYBB1.948e-6362.22Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DIDNA3.322e-6363.89Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_GIALA9.667e-6365.36Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_OXYTR5.304e-6161.33Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYMT9.048e-6160.22Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYLE9.048e-6160.22Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DILMA2.633e-6061.67Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003A07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186510 ID=CN186510; Name=CN186510; organism=Citrus sinensis; type=EST; length=707bp
AGTATTCCATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCT
TTTATCACTGTTTTAGAGTTACTGCATCCACTTTACAATGGCAGATGGTC
AGGAGACTGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAA
GCACTTGAAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCAT
GCCTCCTCGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGT
TTGGAACTGCTTCAAACATCAAAAGCAGGGTTAATCGTCAATCTGTATTG
GGTGCAATCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAGGTCCC
TCCCAATGGGCTTGTGCTGTACACGGGAACAATTGTTACTGACGATGGGA
AGGAAAAGAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTAATGCA
TCTCTTTACCTCTGTGACAATAAGTTTCACACTGAAGCTCTGAATGAACT
GTTGGAGTCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAATGGAA
CCCTTTTTGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACAAGTTC
AGTGTTGACCTTCCAAAGAAACATGGAAGAGGTGGACAGTCAGCCCTTCG
GTTTGCCCGACTTCGAATGGAGAAGCGCCATAACTATGTGAGGAAAACAG
CTGAACT
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