CN186510

Overview
NameCN186510
Unique NameCN186510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2092 contig Csv1_Contig2092:47..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: ERF1_LOXST (Eukaryotic peptide chain release factor subunit 1 OS=Loxodes striatus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.484e-59
Identity = 105/181 (58.01%), Postives = 141/181 (77.90%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            +GNGTS+ISLI+PP++Q+S + + L D  G A NIKS+  +++V  AI S +Q+L +  ++PPNGL+LY G  + +D K EK++    EP R IN + +LC+N F+T+ L ++L+  DKFGFI+MDGNG+LFGTL GN RE+LHKF VDLPKKHGRGGQSALRFARLR+EKRHNY++K AE
Sbjct:   25 KGNGTSLISLIIPPKEQISLINQKLTDAHGRAQNIKSKAVQKAVQDAIISTKQKLSVIKQIPPNGLILYCGKFIGEDEKTEKQILEVLEPLRAINTTFFLCENTFYTQPLRDMLQEQDKFGFIIMDGNGSLFGTLQGNAREILHKFDVDLPKKHGRGGQSALRFARLRLEKRHNYMKKVAE 205          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_THEVO (Peptide chain release factor subunit 1 OS=Thermoplasma volcanium GN=prf1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.100e-33
Identity = 75/179 (41.90%), Postives = 102/179 (56.98%), Query Frame = 1
Query:  169 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            G GT +ISL +PP  Q+S V   L DE+ T+SNIKS+  R++VL AI S   RLK Y   PPNGLV + G I T   + +  T   EP  PI   +Y CD++FHTE L  +L+  + +G IV+D      G L+G   EV+      +P KH +GGQS+ RF RL     + + +K  E
Sbjct:   27 GRGTELISLYIPPEKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYRFPPPNGLVFFVGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHTEMLKAMLDEKEIYGLIVIDRKEATVGFLNGTRIEVVENVQSQVPSKHHQGGQSSRRFERLIEIAANEFFKKVGE 205          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_THEAC (Peptide chain release factor subunit 1 OS=Thermoplasma acidophilum GN=prf1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.033e-32
Identity = 74/179 (41.34%), Postives = 100/179 (55.87%), Query Frame = 1
Query:  169 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            G GT +ISL +PP  Q+S V   L DE+ T+SNIKS+  R++VL AI S   RLK Y   PPNG V + G I T   + +  T   EP  PI   +Y CD++FH E L  +LE  + +G IV+D      G L+G   EV+      +P KH +GGQS+ RF RL     + + +K  E
Sbjct:   27 GRGTELISLYIPPDKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMARLKYYKTPPPNGFVFFEGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHLEMLKTMLEEKEIYGLIVIDRKEATVGFLNGTRIEVVDNVQSQVPSKHHQGGQSSRRFERLIEIAANEFFKKVGE 205          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_PYRAB (Peptide chain release factor subunit 1 OS=Pyrococcus abyssi GN=prf1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.174e-32
Identity = 71/180 (39.44%), Postives = 103/180 (57.22%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VLGA+  A Q LKLY + P NGL L+ G +   +G          P  P+N  LY CD  F TE L E+L   D +G I ++ N    G L G   EVL + + ++P K   GGQSA R+ R+R ++ H ++++  E
Sbjct:   25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGNTDIRLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVLDELTSNVPGKTRAGGQSARRYERIREQETHEFMKRIGE 204          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_METKA (Peptide chain release factor subunit 1 OS=Methanopyrus kandleri GN=prf1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.825e-32
Identity = 73/180 (40.56%), Postives = 103/180 (57.22%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            RG GT +I++ +PP +++S V   + +E+  ASNIKS+  R++V  AI    QRLK+  + P NGLV+  GT V D  KEK V    EP  P++  +Y CD+KF+ E L E LE  D +G +VMD      G + G   E + + + D+P KH  GGQS  RF RL     H + +K  E
Sbjct:   23 RGQGTELITIYIPPENRLSDVIAQMREEYSQASNIKSKRTRKNVQSAIEVVMQRLKMVGETPENGLVVLVGT-VQDGTKEKMVAELIEPPEPVDRFIYRCDSKFYLEPLKEYLEEKDVYGILVMDRREATIGLVKGKRIEPVKRLTSDVPGKHKAGGQSQRRFDRLIEHAAHEFYQKVGE 201          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_THEON (Peptide chain release factor subunit 1 OS=Thermococcus onnurineus (strain NA1) GN=prf1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.153e-31
Identity = 69/180 (38.33%), Postives = 102/180 (56.67%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            RG  T ++SL +P    +++V + L +E+GTA NIKS+  R++VLGA+  A Q LKLY K P NGL L+ G +   +G          P  P+   LY CD  F TE L E+L   D +G I ++ N    G L G   EV+   + ++P K   GGQSA R+ R+R ++ H ++++ AE
Sbjct:   22 RGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYRKTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLKVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVIDDLTSNVPGKTRAGGQSARRYERIREQETHEFMKRIAE 201          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_PYRKO (Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis GN=prf1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.153e-31
Identity = 68/180 (37.78%), Postives = 103/180 (57.22%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            RG  T ++SL +P    +++V + L +E+GTA NIKS+  R++VLGA+  A Q LKLY + P NGL L+ G +   +G          P  P+N  LY CD  F TE L E+L   D +G I ++ N    G L G   EV+ + + ++P K   GGQSA R+ R+R ++ H ++++  E
Sbjct:   22 RGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVIDELTSNVPGKTRAGGQSARRYERIREQETHEFMKRIGE 201          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_PYRHO (Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii GN=prf1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.505e-31
Identity = 70/180 (38.89%), Postives = 103/180 (57.22%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VLGA+  A Q LKLY + P NGL L+ G +   +G          P  P+N  LY CD  F TE L E+L   D +G I ++ N    G L G   E+L + + ++P K   GGQSA R+ R+R ++ H ++++  E
Sbjct:   25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEIEGNTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIELLDELTSNVPGKTRAGGQSARRYERIREQETHEFMKRIGE 204          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_THESM (Peptide chain release factor subunit 1 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.353e-31
Identity = 67/180 (37.22%), Postives = 101/180 (56.11%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            RG  T ++SL +P    +++V + L +E+GTA NIKS+  R++VLGA+  A Q LKLY + P  GL L+ G +   +G          P  P+N  LY CD  F TE L E+L   D +G I ++ N    G L G   EV+   + ++P K   GGQSA R+ R+R ++ H ++++  E
Sbjct:   22 RGRATELVSLYIPADYDLNKVMQQLREEYGTAQNIKSKTTRKNVLGALERAMQHLKLYRQTPETGLALFVGNVSEQEGVSDIRVFAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGILRGKKIEVIEDLTSNVPGKTRAGGQSARRYERIREQEAHEFMKRIGE 201          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_PYRFU (Peptide chain release factor subunit 1 OS=Pyrococcus furiosus GN=prf1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.353e-31
Identity = 70/180 (38.89%), Postives = 103/180 (57.22%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VLGA+  A Q LKLY + P NGL L+ G +   +G          P  P+N  LY CD  F TE L E+L   + +G I ++ N    G L G   EVL + + ++P K   GGQSA R+ R+R ++ H ++++  E
Sbjct:   25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGVTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKEAYGLITVEKNEATIGILRGKRIEVLDELTSNVPGKTRAGGQSARRYERIREQETHEFMKRIGE 204          
The following BLAST results are available for this feature:
BLAST of CN186510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_LOXST6.484e-5958.01Eukaryotic peptide chain release factor subunit 1 ... [more]
RF1_THEVO2.100e-3341.90Peptide chain release factor subunit 1 OS=Thermopl... [more]
RF1_THEAC3.033e-3241.34Peptide chain release factor subunit 1 OS=Thermopl... [more]
RF1_PYRAB5.174e-3239.44Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_METKA8.825e-3240.56Peptide chain release factor subunit 1 OS=Methanop... [more]
RF1_THEON1.153e-3138.33Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_PYRKO1.153e-3137.78Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_PYRHO1.505e-3138.89Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_THESM3.353e-3137.22Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_PYRFU3.353e-3138.89Peptide chain release factor subunit 1 OS=Pyrococc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003A07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186510 ID=CN186510; Name=CN186510; organism=Citrus sinensis; type=EST; length=707bp
AGTATTCCATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCT
TTTATCACTGTTTTAGAGTTACTGCATCCACTTTACAATGGCAGATGGTC
AGGAGACTGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAA
GCACTTGAAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCAT
GCCTCCTCGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGT
TTGGAACTGCTTCAAACATCAAAAGCAGGGTTAATCGTCAATCTGTATTG
GGTGCAATCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAGGTCCC
TCCCAATGGGCTTGTGCTGTACACGGGAACAATTGTTACTGACGATGGGA
AGGAAAAGAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTAATGCA
TCTCTTTACCTCTGTGACAATAAGTTTCACACTGAAGCTCTGAATGAACT
GTTGGAGTCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAATGGAA
CCCTTTTTGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACAAGTTC
AGTGTTGACCTTCCAAAGAAACATGGAAGAGGTGGACAGTCAGCCCTTCG
GTTTGCCCGACTTCGAATGGAGAAGCGCCATAACTATGTGAGGAAAACAG
CTGAACT
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