CN186510

Overview
NameCN186510
Unique NameCN186510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_PICTO (Peptide chain release factor subunit 1 OS=Picrophilus torridus GN=prf1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.260e-30
Identity = 72/179 (40.22%), Postives = 99/179 (55.31%), Query Frame = 1
Query:  169 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            G GT +ISL +PP  Q+S V + L +E+ T+SNIKS+  R++VL AI S   RLK Y + P  GLV + G I T   + +  T   EP  PI   +Y CD+ FH E L   L+  D +G IV+D      G L G   EV+      +P KH +GGQS+ RF RL     +++ +K  E
Sbjct:   23 GRGTELISLYIPPDKQISDVVQYLREEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYKQPPETGLVFFVGHIATRGDQTEMYTKIIEPPEPIQTFMYKCDSNFHLEQLESQLKEKDIYGLIVIDRKEATVGFLKGTRIEVVDYEQSLVPSKHHQGGQSSRRFERLIEIAANDFFKKIGE 201          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_ARCFU (Peptide chain release factor subunit 1 OS=Archaeoglobus fulgidus GN=prf1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 71/180 (39.44%), Postives = 102/180 (56.67%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            +G GT +I+L +PP   ++ V+  L  E   ASNIKS+  R +VL  I +   RLK + K P NG+V+ +G +V  +GKEK +T   EP  P+    Y CD+KF+ + L E+L     +G IV+D      G L G   EVL   +  +P KH +GGQS++RF RLR    H + +K  E
Sbjct:   20 KGRGTELITLYIPPDKNIADVSNQLRSELSQASNIKSKQTRTNVLAGIEAILNRLKHFRKPPENGMVIISG-VVNINGKEKHITEIIEPPEPVPLYKYHCDSKFYLDPLKEMLTEKKLYGLIVLDRREATVGLLKGKRIEVLDWDTSMVPGKHRQGGQSSVRFERLREIAIHEFYKKVGE 198          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_METTH (Peptide chain release factor subunit 1 OS=Methanobacterium thermoautotrophicum GN=prf1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 67/181 (37.02%), Postives = 101/181 (55.80%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDD-GKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            RG GT ++S+ +PP  Q+S V K + +E   ++NIKS+  +++V  AI    QRLKL+ K P  GLV++ G +     G EK  T  FEP  PI   +Y C+++F+ E L E+LE  + +G  V+D       TL G   ++L   +  +P KH  GGQS  RF RL     H ++++  E
Sbjct:   23 RGRGTELVSVYIPPDRQISDVAKHMREELSQSANIKSKQTKKNVQSAIEVIMQRLKLFPKPPEKGLVMFVGMVPRGGPGTEKMETYVFEPPEPIKTYIYHCNSEFYLEPLREMLEEKETYGLAVLDRKEATIATLKGKRIDILKTLTSGVPGKHKAGGQSQRRFDRLIDLAAHEFLKRIGE 203          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_HALWD (Peptide chain release factor subunit 1 OS=Haloquadratum walsbyi (strain DSM 16790) GN=prf1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.010e-27
Identity = 71/180 (39.44%), Postives = 103/180 (57.22%), Query Frame = 1
Query:  169 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTA 702
            G+GT ++++ +PP  QVS V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NG+VL++G + T  G+   VT   E P  P+ +  Y CD+ F T+ L ++L     FG IV+D      G L G   E +   S  +P K  +GGQSA RFARLR+E   N+ ++ A
Sbjct:   29 GSGTQLVTIYIPPDRQVSDVVAHITQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTYPPDNGIVLFSGAVSTGGGQTTMVTRSLESPPEPVQSFRYHCDSDFLTDPLEDMLADKGLFGLIVLDRREANVGWLKGKRVEPVKSASSLVPGKQRKGGQSAQRFARLRLEAIDNFYQEVA 208          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_METST (Peptide chain release factor subunit 1 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=prf1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.837e-27
Identity = 63/178 (35.39%), Postives = 100/178 (56.18%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT-DDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRK 696
            +G GT ++S+ +PP  Q+S V K + DE G ++NIKS+  R++V  AI    QRLKL+ K P  GLV++ G I     G EK  T  F+P   +    Y CD++F  E L +++E  + +G +V+D   +   TL G   +++   +  +P KH  GGQS  RF R+     H ++++
Sbjct:   23 KGRGTELVSVYIPPEKQISDVAKQMRDELGQSANIKSKQTRKNVQSAIEVIIQRLKLFPKPPEKGLVMFVGMIPKGGPGTEKMETYVFQPPEAVQTYTYHCDSQFFVEPLKQIIEYKEVYGVVVLDRKESTIATLRGKRIDIIKHLTSGVPGKHKAGGQSQRRFDRVIELAAHEFLKR 200          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_METMA (Peptide chain release factor subunit 1 OS=Methanosarcina mazei GN=prf1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.545e-27
Identity = 64/180 (35.56%), Postives = 98/180 (54.44%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            +G  T +ISL +PP  Q+  VT  L DE G A+NIKS++ R +V GAI S   RL+  +KVP NG+V +TG +     K    +    P  PI    Y CD+ F+ E L ++L+  + +G +V+D      G L G   +     +  +P K  +GGQSA RF +LR+   H++ ++  +
Sbjct:   23 KGRSTELISLYIPPDKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIVPPDPITVYKYHCDSSFYLEPLEDMLKDKNTYGLLVLDRREATIGLLVGKRIQPFRNLTSTVPGKQRKGGQSAHRFQQLRLIAIHDFYKRIGD 202          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_HALLT (Peptide chain release factor subunit 1 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=prf1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.545e-27
Identity = 74/206 (35.92%), Postives = 107/206 (51.94%), Query Frame = 1
Query:   91 ADGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPP-NGLVLYTGTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTA 702
            +D QE   +                 G+GT ++++ +P   QVS V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NG+V+++G I    G+   VT   E P +P+ +  Y CD+ F TE L  +LE    FG IV+D      G L G   E +   S  +P K  +GGQSA RFARLR+E   N+ ++ A
Sbjct:    3 SDAQEASDDRRKYEFRKVIEELRDFEGSGTQLVTIYIPEDRQVSDVVAHVTQEHSEASNIKSKQTRTAVQDALTSIKDRLRYYDTFPPENGMVIFSGAIDAGGGQTDMVTRTLESPPQPVESFRYHCDSAFLTEPLEHMLEDSGLFGLIVLDRREANVGWLKGKRVEPVKSASSLVPGKQRKGGQSAQRFARLRLEAIDNFYQEVA 208          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_METS3 (Peptide chain release factor subunit 1 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=prf1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.547e-27
Identity = 66/181 (36.46%), Postives = 97/181 (53.59%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVT-DDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            +G GT ++S+ +P   Q+S V K + DE G ++NIKS+  R++V  AI    QR++L+   P NGLVL+ G I     G EK  T  FEP  PI    Y C+N+F  E L  ++E  + +G  V+D       TL G    +L+  +  +P KH  GGQS  RF R+     H + ++  E
Sbjct:   23 KGRGTELVSVYIPHDKQISDVGKQMRDELGQSANIKSKQTRKNVQSAIEVIMQRIRLFKAAPENGLVLFVGMIPRGGPGTEKMETYVFEPPEPITTYWYQCNNEFFLEPLEYMIEERETYGLAVIDRKEATIATLRGKKVNILNHLTSGVPGKHKAGGQSQRRFDRVIDLAAHEFKKRIGE 203          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF11_METAC (Peptide chain release factor subunit 1-1 OS=Methanosarcina acetivorans GN=prf11 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 64/180 (35.56%), Postives = 96/180 (53.33%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            +G  T +ISL +P   Q+  VT  L DE G A+NIKS++ R +V GAI S   RL+  +KVP NG+V +TG +     K    +    P  PI    Y CD+ F+ E L ++L+    FG +V+D      G L G   +     +  +P K  +GGQSA RF +LR+   H++ ++  +
Sbjct:   23 KGRSTELISLYIPADKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIIPPEPITVYKYHCDSSFYLEPLEDMLKDKSTFGLLVLDRREATIGLLVGKRIQAFRNLTSTVPGKQRKGGQSAHRFQQLRLIAIHDFYKRIGD 202          
BLAST of CN186510 vs. ExPASy Swiss-Prot
Match: RF1_METBU (Peptide chain release factor subunit 1 OS=Methanococcoides burtonii (strain DSM 6242) GN=prf1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.904e-26
Identity = 65/180 (36.11%), Postives = 97/180 (53.89%), Query Frame = 1
Query:  166 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAE 705
            +G GT +ISL +PP  Q+S V   L +E   ASNIKS++ + +V GAI S   RL+ Y  VP NG+V +TG +     K    T   EP +PI    Y CD+ F    L ++L+    +G +V+D      G L+G   E     +  +P K  +GGQSA RF +LR+   H++ ++  +
Sbjct:   23 KGRGTELISLYIPPDKQISDVVSQLRNEHSQASNIKSKLTKTNVQGAIDSIMSRLR-YGTVPENGIVYFTGAVDVGANKTNMETTIVEPPQPIITYRYHCDSSFFLTPLEDMLKEAKTYGLLVLDRREATVGLLTGKQIEAFRNLTSTVPGKQRKGGQSAHRFQQLRLIAIHDFYKRIGD 201          
The following BLAST results are available for this feature:
BLAST of CN186510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RF1_PICTO8.260e-3040.22Peptide chain release factor subunit 1 OS=Picrophi... [more]
RF1_ARCFU2.403e-2939.44Peptide chain release factor subunit 1 OS=Archaeog... [more]
RF1_METTH1.558e-2837.02Peptide chain release factor subunit 1 OS=Methanob... [more]
RF1_HALWD1.010e-2739.44Peptide chain release factor subunit 1 OS=Haloquad... [more]
RF1_METST3.837e-2735.39Peptide chain release factor subunit 1 OS=Methanos... [more]
RF1_METMA6.545e-2735.56Peptide chain release factor subunit 1 OS=Methanos... [more]
RF1_HALLT6.545e-2735.92Peptide chain release factor subunit 1 OS=Halorubr... [more]
RF1_METS38.547e-2736.46Peptide chain release factor subunit 1 OS=Methanob... [more]
RF11_METAC1.458e-2635.56Peptide chain release factor subunit 1-1 OS=Methan... [more]
RF1_METBU1.904e-2636.11Peptide chain release factor subunit 1 OS=Methanoc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003A07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186510 ID=CN186510; Name=CN186510; organism=Citrus sinensis; type=EST; length=707bp
AGTATTCCATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCT
TTTATCACTGTTTTAGAGTTACTGCATCCACTTTACAATGGCAGATGGTC
AGGAGACTGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAA
GCACTTGAAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCAT
GCCTCCTCGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGT
TTGGAACTGCTTCAAACATCAAAAGCAGGGTTAATCGTCAATCTGTATTG
GGTGCAATCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAGGTCCC
TCCCAATGGGCTTGTGCTGTACACGGGAACAATTGTTACTGACGATGGGA
AGGAAAAGAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTAATGCA
TCTCTTTACCTCTGTGACAATAAGTTTCACACTGAAGCTCTGAATGAACT
GTTGGAGTCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAATGGAA
CCCTTTTTGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACAAGTTC
AGTGTTGACCTTCCAAAGAAACATGGAAGAGGTGGACAGTCAGCCCTTCG
GTTTGCCCGACTTCGAATGGAGAAGCGCCATAACTATGTGAGGAAAACAG
CTGAACT
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