CN186509

Overview
NameCN186509
Unique NameCN186509
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 9.098e-17
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = -2
Query:  569 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 760
            E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  370 ESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_MESAU (Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 9.098e-17
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = -2
Query:  569 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 760
            E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  370 ESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_HUMAN (Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 9.098e-17
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = -2
Query:  569 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 760
            E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  370 ESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_BOVIN (Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 9.098e-17
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = -2
Query:  569 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 760
            E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  370 ESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = -2
Query:  566 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRS--FDEFSDDGEIYDD 760
            E   LLEW AN Y+ FG TLE +T+KSQEGSQF RGFGGIGGILRY++D +S   DE  +DG   DD
Sbjct:  371 ESQPLLEWLANNYKMFGATLEIITDKSQEGSQFVRGFGGIGGILRYKVDFQSMQLDELDNDGFDLDD 437          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_PODAN (Eukaryotic peptide chain release factor subunit 1 OS=Podospora anserina GN=SU2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.716e-15
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = -2
Query:  566 KSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 757
            + S LEW A  Y+ FG TLEFV+++S EG+QF +GFGGIGGILRY+++    +E  DD E YDD
Sbjct:  372 QESFLEWIAEHYKDFGTTLEFVSDRSTEGNQFVKGFGGIGGILRYKVNFEQLNEVDDDDEYYDD 435          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_TRYBB (Eukaryotic peptide chain release factor subunit 1 OS=Trypanosoma brucei brucei GN=ERF1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.112e-14
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = -2
Query:  578 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLD---MRSFDEFSDDGE 760
            E+   ++W A  YR+FGC LE +TN+SQEG+QF RGFGGIGG+LRY+LD   +R  ++  DD E
Sbjct:  373 EQEDFVDWLATNYRKFGCALELITNRSQEGTQFVRGFGGIGGVLRYKLDIIALRDVEKKEDDEE 436          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_CAEEL (Eukaryotic peptide chain release factor subunit 1 OS=Caenorhabditis elegans GN=erf-1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.478e-14
Identity = 35/54 (64.81%), Postives = 42/54 (77.78%), Query Frame = -2
Query:  599 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFD 760
            E   LLEWFAN Y+ FG  LE VT+KSQEG+QF RGFGGIGG+LRY++D+   D
Sbjct:  377 ETMPLLEWFANNYKNFGAALEIVTDKSQEGAQFVRGFGGIGGLLRYRVDLAHVD 430          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_GIALA (Eukaryotic peptide chain release factor subunit 1 OS=Giardia lamblia GN=ERF1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.236e-14
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = -2
Query:  560 LLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDM---RSFDEFSDDGEIYDDSE 748
            LLEWF + Y+ +G +LEF+TN+S EG+QFC GFGGIGG+LR+Q+D+     F + SD+    DD E
Sbjct:  389 LLEWFVDNYKNYGASLEFITNRSAEGTQFCSGFGGIGGLLRWQVDLVEAARFMQESDEDSFMDDLE 454          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_SCHPO (Eukaryotic peptide chain release factor subunit 1 OS=Schizosaccharomyces pombe GN=sup45 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.970e-13
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = -2
Query:  560 LLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 748
            L EW A  Y+ +G  LEFV+++SQEG QF +GFGGIG ++RYQLD+   D  SD  E Y DS+
Sbjct:  373 LSEWLAEHYKDYGANLEFVSDRSQEGMQFVKGFGGIGAVMRYQLDLSMLDPESD--EFYSDSD 433          
The following BLAST results are available for this feature:
BLAST of CN186509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ERF1_MOUSE9.098e-1760.94Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MESAU9.098e-1760.94Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_HUMAN9.098e-1760.94Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BOVIN9.098e-1760.94Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DROME1.188e-1662.69Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PODAN1.716e-1556.25Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TRYBB1.112e-1454.69Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CAEEL2.478e-1464.81Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_GIALA3.236e-1453.03Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_SCHPO7.970e-1353.97Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003A07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186509 ID=CN186509; Name=CN186509; organism=Citrus sinensis; type=EST; length=761bp
CAAAAGTATCACTTTATTATTATAGCAAGCCATGGCCTACCCATTATGGA
GATCTAACAAGCATGTTTAAACAACATAACCTCCCACAAATAACCCAGTC
CGATAGACAACAGGAGATCCATCACACTAATTAACATGCATTGTACAAAC
AATAGAACCATAAAAAGATAAACCCAAGTCTGAGAGAACAGTTTCAATCC
ACAAGCCCCTAGGGCTTGCCATGGGAGAGATCCCCATATCCATCATCTGA
ATGCGAGGGATTCGTAAGGTCCTCTCCAACATTAGCTAGTAGCTTTGCAT
AATTCCTCCCTTCTGGAGCTAGTAGCTTTGCATAATTCCTCCCTTCTGGA
TCATACCCAGCAGCGCCATTACAAAGCCCATATAACAGAATCATACATAG
CTTGCTCAGCTAAGACACGACATAAACGTACCTCAGCAGCAACTTGGGAA
CATTTTGGAACATAGGTACTCCAAAGTTGGCGCGACGAATCGCGCGCTGG
TGCAGGCCCTTCACGTCGTCATCCTGCACCAGCAATGGGGTAGGTTTGAT
TGATTGCTATTCAGAATCATCATAAATTTCTCCATCATCAGAAAACTCAT
CAAATGATCTCATATCAAGCTGGTAGCGGAGTATTCCACCAATACCACCA
AAGCCTCTGCAAAACTGGGATCCCTCTTGTGATTTGTTGGTAACAAACTC
GAGTGTGCAACCAAACCTCCTGTATTCATTTGCAAACCACTCAAGCAGCG
ATGACTTTTCC
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