CN186509

Overview
NameCN186509
Unique NameCN186509
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_CRYHO (Eukaryotic peptide chain release factor subunit 1 OS=Cryptosporidium hominis GN=erf1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.970e-13
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = -2
Query:  584 LLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDD 748
            L EW  N Y+ +G  LEFVTNKSQEG+QF +GFGG GGILRY++D + +    DD
Sbjct:  370 LTEWLVNTYQNYGAQLEFVTNKSQEGNQFQKGFGGFGGILRYKVDFQDYAVVEDD 424          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_YEAST (Eukaryotic peptide chain release factor subunit 1 OS=Saccharomyces cerevisiae GN=SUP1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.776e-12
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = -2
Query:  560 LLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 748
            L+EW A  Y+ FG TLEF+T+KS EG+QF  GFGGIG +LRY+++     + S+D E YD+ E
Sbjct:  369 LIEWLAANYKNFGATLEFITDKSSEGAQFVTGFGGIGAMLRYKVNFEQLVDESED-EYYDEDE 430          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_BLEMU (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma musculus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.166e-12
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = -2
Query:  566 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDD-GEIYDD 760
            EK  L EW  + Y +FG  LEF+T++SQEG+QF RGFGG+G  LRYQ+DM   +   ++  E +DD
Sbjct:  368 EKGPLPEWIVDNYMKFGAGLEFITDRSQEGAQFVRGFGGLGAFLRYQVDMAHLNAGEEELDEEWDD 433          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_BLEAM (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma americanum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.166e-12
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = -2
Query:  566 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDD-GEIYDD 760
            EK  L EW  + Y +FG  LEF+T++SQEG+QF RGFGG+G  LRYQ+DM   +   ++  E +DD
Sbjct:  368 EKGPLPEWIVDNYMKFGAGLEFITDRSQEGAQFVRGFGGLGAFLRYQVDMAHLNAGEEELDEEWDD 433          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_DILMA (Eukaryotic peptide chain release factor subunit 1 OS=Dileptus margaritifer GN=eRF1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.151e-11
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = -2
Query:  566 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 760
            + + L EWF + Y++FG  LE +T+KS EG+QF +GFGGIGGILRY+++    D  ++D    DD
Sbjct:  370 DNTPLSEWFLDNYKKFGTHLEIITDKSSEGNQFVKGFGGIGGILRYKMEQTHGDVETEDAFNEDD 434          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_STYLE (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia lemnae GN=ERF1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = -2
Query:  569 KSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMR-SFDEFSDDGEIYD 757
            +  L EW  + Y+ +G  +EF+T+KSQEG QF +GFGGIGG LRY++DM  +  +  D G+ +D
Sbjct:  376 EDQLAEWLCHNYQNYGAQVEFITDKSQEGYQFVKGFGGIGGFLRYKVDMEDALGDVGDGGDDFD 439          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_DIDNA (Eukaryotic peptide chain release factor subunit 1 OS=Didinium nasutum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.503e-11
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  566 LLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 748
            L EWF + Y+++   LE VT+KS EGSQF +GFGGIGGILRY++D   FD+  ++ E  DD
Sbjct:  375 LTEWFMDNYKKYVSHLEIVTDKSSEGSQFLKGFGGIGGILRYKMD-TDFDDTENNNEWNDD 434          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_OXYTR (Eukaryotic peptide chain release factor subunit 1 OS=Oxytricha trifallax GN=ERF1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = -2
Query:  566 KSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 757
            + SL EW  + Y+ +G  +EF+T+KSQEG QF +GFGGIGG LRY++D+   D   D G   DD
Sbjct:  376 EDSLAEWLCHNYQNYGAQVEFITDKSQEGFQFVKGFGGIGGFLRYKVDIE--DHHGDLGAGGDD 437          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_LOXST (Eukaryotic peptide chain release factor subunit 1 OS=Loxodes striatus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.373e-11
Identity = 29/67 (43.28%), Postives = 45/67 (67.16%), Query Frame = -2
Query:  560 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 760
            E+ +L EW  + Y+ +G  LEFVT++SQEGSQF +GFGGI G LRY+++    +   ++G +  D +
Sbjct:  368 ERFALTEWLIDNYKNYGARLEFVTDRSQEGSQFVKGFGGICGFLRYEVNFEKMEFQEEEGYLDPDED 434          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_STYMT (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia mytilus GN=ERF1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.743e-11
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = -2
Query:  569 KSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDM-RSFDEFSDDGEIYD 757
            +  L EW  + Y+ +   +EF+T+KSQEG QF +GFGGIGG LRY++DM  +  +  D G+ +D
Sbjct:  376 EDQLAEWLCHNYQNYXAQVEFITDKSQEGYQFVKGFGGIGGFLRYKVDMEEALGDVGDGGDDFD 439          
The following BLAST results are available for this feature:
BLAST of CN186509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ERF1_CRYHO7.970e-1358.18Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_YEAST1.776e-1252.38Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BLEMU5.166e-1250.00Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BLEAM5.166e-1250.00Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DILMA1.151e-1147.69Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYLE1.503e-1146.88Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DIDNA1.503e-1154.10Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_OXYTR4.373e-1150.00Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_LOXST4.373e-1143.28Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYMT9.743e-1145.31Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003A07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186509 ID=CN186509; Name=CN186509; organism=Citrus sinensis; type=EST; length=761bp
CAAAAGTATCACTTTATTATTATAGCAAGCCATGGCCTACCCATTATGGA
GATCTAACAAGCATGTTTAAACAACATAACCTCCCACAAATAACCCAGTC
CGATAGACAACAGGAGATCCATCACACTAATTAACATGCATTGTACAAAC
AATAGAACCATAAAAAGATAAACCCAAGTCTGAGAGAACAGTTTCAATCC
ACAAGCCCCTAGGGCTTGCCATGGGAGAGATCCCCATATCCATCATCTGA
ATGCGAGGGATTCGTAAGGTCCTCTCCAACATTAGCTAGTAGCTTTGCAT
AATTCCTCCCTTCTGGAGCTAGTAGCTTTGCATAATTCCTCCCTTCTGGA
TCATACCCAGCAGCGCCATTACAAAGCCCATATAACAGAATCATACATAG
CTTGCTCAGCTAAGACACGACATAAACGTACCTCAGCAGCAACTTGGGAA
CATTTTGGAACATAGGTACTCCAAAGTTGGCGCGACGAATCGCGCGCTGG
TGCAGGCCCTTCACGTCGTCATCCTGCACCAGCAATGGGGTAGGTTTGAT
TGATTGCTATTCAGAATCATCATAAATTTCTCCATCATCAGAAAACTCAT
CAAATGATCTCATATCAAGCTGGTAGCGGAGTATTCCACCAATACCACCA
AAGCCTCTGCAAAACTGGGATCCCTCTTGTGATTTGTTGGTAACAAACTC
GAGTGTGCAACCAAACCTCCTGTATTCATTTGCAAACCACTCAAGCAGCG
ATGACTTTTCC
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