CN186508

Overview
NameCN186508
Unique NameCN186508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186508 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.806e-27
Identity = 71/169 (42.01%), Postives = 94/169 (55.62%), Query Frame = 1
Query:   97 DPSPLQDICVAINNPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFG 603
            D   +QD C      +   F+NG  CK+P    A+DF  + L + G+T N L  + T     + PGLNTLG+S  R D    G  P H HPR+SE+L V++G +  GFV +   NN +   VL KGD FVFP GL+HF  + G   A A+S  NSQ PG + I + VFG
Sbjct:   19 DSDNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDT---NNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNIGE-VFG 183          
BLAST of CN186508 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.806e-27
Identity = 80/200 (40.00%), Postives = 109/200 (54.50%), Query Frame = 1
Query:   97 DPSPLQDICVAINNPKD--GVF-VNGKFCKDPKLARAEDFFFSGLGKPGNTANRL-GVDET-DANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIG-KTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 678
            DP  L D CVA        G F +NG  C DP LARA+ F  S L +  N A  L G + T  +    +PG N  G++  RID AP G  PPH HPRASE  LVL G++ VGF  +   +  L +++L  G+AFVFP  ++HF +N+     AV  S LNSQ PG   +  + F   P +  + L KAF++  + V+ +Q
Sbjct:   23 DPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSPAASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADT---SYRLYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAFKITGQDVQRIQ 219          
BLAST of CN186508 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 79/189 (41.80%), Postives = 101/189 (53.44%), Query Frame = 1
Query:  112 QDICVAINNPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 678
            QD CVA     D     G  CK      A DF + GL   GNT+N +    T A V Q PG+N LGISA R+D A  G  P H HP ASE+L V +GT+  GF+TS   +NT+ ++ L  GD  VFP GL+H+Q+N G++ AVA  A +   PG      A+F  N P     + K   LD   VK L+
Sbjct:   26 QDFCVADLTCSDTPA--GYPCKAS--VGAGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSS--SNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPGLQITDYALFANNLP--SAIVEKVTFLDDAQVKKLK 206          
BLAST of CN186508 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.223e-23
Identity = 75/190 (39.47%), Postives = 96/190 (50.53%), Query Frame = 1
Query:  109 LQDICVAINNPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 678
            + D CVA N P      +G  CK+     A DF +SGL KPGNT N +    T A V Q PG+  LG++  R+D AP G  P H HP ASEIL V+EGT+   F++S    N +  K L  GD  VFP GL+ FQ   GK  A     L  + PG + I +          P  +A    LD  T+K L+
Sbjct:   24 VNDFCVA-NGPGARDTPSGFVCKNTAKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFISS---GNKVYEKALYPGDVMVFPQGLLDFQEITGKI-APGLCELRQRNPG-LQILEFQHCFPTIFPPKTIAGTTCLDEATIKKLK 207          
BLAST of CN186508 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.600e-22
Identity = 71/198 (35.86%), Postives = 102/198 (51.52%), Query Frame = 1
Query:   97 DPSPLQDICVAIN-NPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDE---TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 678
            DP  L D  +  N NP +   + G F           F F+G  K  NT++    +    T A + + P LN   +S   + + P    PPH HPR++E+LLV++G L VGF+ +    N L ++ L  GD FVFP G++HFQFN G   A+A SA  S  PG + +   VFG    I+   LAK+F+ D  T+  L+
Sbjct:   27 DPDILTDYVIPANGNPMN---ITGDF-----------FTFTGFRKVFNTSSAPEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDT---TNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGTG--IDDAVLAKSFKTDVPTILKLK 205          
BLAST of CN186508 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 57/138 (41.30%), Postives = 82/138 (59.42%), Query Frame = 1
Query:  265 TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIGKTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 678
            T A + + P LN   +S   + Y P    PPH HPR++E+LL+++G L VGFV +    N L ++ L  GD FVFP G++HFQFN G   A+A SA  S   G +++   VFG N  I+   LAK+F+ D  T++ L+
Sbjct:   73 TKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDT---TNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGTN--IDDAVLAKSFKTDVPTIQKLK 205          
BLAST of CN186508 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 1
Query:  232 GNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEILLVLEGTLHVGFVTSDQLNNTLISKVLNKGDAFVFPIGLIHFQFNIG-KTNAVAYSALNSQFPGEITIADAVFGANPPINPDFLAKAFQLDPKTVKDLQ 678
            GN+ +   +  T A   + P L    +S   + +      PPHIHPRASE+L+V++G L VG V + + N T+ ++ L  GD FVFP G++HFQFN G    A A+SA  S  PG I++  A+FG+   I+   L K+   D  TV  L+
Sbjct:   58 GNSGDPAKLTVTKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAAR-NGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTISLPAALFGSG--IDDTILDKSMHTDQATVDQLK 204          
The following BLAST results are available for this feature:
BLAST of CN186508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL34_ARATH4.806e-2742.01Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GL31_ORYSJ4.806e-2740.00Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL814_ORYSJ1.546e-2541.80Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GLP1_IPONI3.223e-2339.47Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]
GL92_ORYSJ1.600e-2235.86Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL93_ORYSJ1.354e-2141.30Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GL91_ORYSJ4.817e-1938.67Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003A06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186508 ID=CN186508; Name=CN186508; organism=Citrus sinensis; type=EST; length=691bp
ATTTAAAGTTCCTGTTAATTAATCACCATGAAGGCAATTCAATTTCTTAT
AGGTTTTGCTGTCTTGGCTTTGGCTTCTTCTTTGGCCTCTGCCTATGACC
CTAGCCCTCTTCAAGATATCTGTGTAGCCATCAATAACCCCAAGGATGGT
GTGTTTGTGAATGGGAAGTTCTGCAAGGACCCCAAGCTTGCGAGAGCAGA
AGATTTCTTCTTTTCCGGGCTTGGCAAGCCTGGAAACACAGCAAATCGAC
TTGGTGTTGATGAAACAGATGCAAATGTGGAGCAAATTCCAGGACTCAAT
ACCCTTGGCATATCAGCATTCCGTATTGACTATGCGCCATATGGCCAAAG
GCCACCTCATATTCACCCCCGTGCCAGTGAAATCCTGTTGGTCCTGGAAG
GAACTCTTCACGTCGGTTTTGTGACATCAGACCAACTGAATAACACACTC
ATCTCAAAAGTTCTGAATAAGGGAGATGCTTTTGTGTTTCCAATTGGTTT
GATTCATTTCCAATTCAACATTGGAAAAACAAATGCAGTTGCCTATTCTG
CTCTAAACAGCCAGTTCCCCGGTGAAATTACCATAGCCGACGCGGTCTTT
GGAGCCAATCCTCCAATCAATCCCGATTTTCTTGCCAAGGCGTTCCAGTT
GGACCCGAAGACAGTGAAAGATCTTCAGCATAAGTTCATTA
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