CX675026

Overview
NameCX675026
Unique NameCX675026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX675026 vs. ExPASy Swiss-Prot
Match: RK14_LEPVR (50S ribosomal protein L14, chloroplastic OS=Lepidium virginicum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = -3 
Query:  169 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 513
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX675026 vs. ExPASy Swiss-Prot
Match: RK14_LACSA (50S ribosomal protein L14, chloroplastic OS=Lactuca sativa GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = -3 
Query:  217 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 513
            +N ADN+GA+ L  I + G   R      A +GD+++A +K   P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARE 105
[Close]
BLAST of CX675026 vs. ExPASy Swiss-Prot
Match: RK14_HELAN (50S ribosomal protein L14, chloroplastic OS=Helianthus annuus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 36/102 (35.29%), Postives = 62/102 (60.78%), Query Frame = -3 
Query:  217 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 513
            +N ADN+GA+ L  I + G   R      A +GD+++A +K   P++   R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ + G I +E
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKDAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRVFGAIARE 105
[Close]
BLAST of CX675026 vs. ExPASy Swiss-Prot
Match: RK14_CRUWA (50S ribosomal protein L14, chloroplastic OS=Crucihimalaya wallichii GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = -3 
Query:  169 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 513
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX675026 vs. ExPASy Swiss-Prot
Match: RK14_CHAGL (50S ribosomal protein L14, chloroplastic OS=Chaetosphaeridium globosum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 38/119 (31.93%), Postives = 69/119 (57.98%), Query Frame = -3 
Query:  169 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 513
            +N ADN+GA+ +  I + G   +        +GD ++  VK+  P++   + +V+ AVIVR  K  +RK+G  + F++NA VI+N +G  +G+ I GP+ +E  +  + +I S A  ++
Sbjct:    8 LNVADNSGARKIMCIRILGGSNK----KYGHIGDTIIGVVKEAIPNMTLKKSEVVRAVIVRTCKELKRKNGTILRFDENAAVIINQEGNPRGTRIFGPVARELREANFTKIVSLAPEVL 122
[Close]
BLAST of CX675026 vs. ExPASy Swiss-Prot
Match: RK14_CAPBU (50S ribosomal protein L14, chloroplastic OS=Capsella bursa-pastoris GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = -3 
Query:  169 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 513
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX675026 vs. ExPASy Swiss-Prot
Match: RK14_BARVE (50S ribosomal protein L14, chloroplastic OS=Barbarea verna GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = -3 
Query:  169 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 513
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX675026 vs. ExPASy Swiss-Prot
Match: RK14_ARATH (50S ribosomal protein L14, chloroplastic OS=Arabidopsis thaliana GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = -3 
Query:  169 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 513
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX675026 vs. ExPASy Swiss-Prot
Match: RK14_AETGR (50S ribosomal protein L14, chloroplastic OS=Aethionema grandiflora GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = -3 
Query:  169 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 513
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
[Close]
BLAST of CX675026 vs. ExPASy Swiss-Prot
Match: RK14_AETCO (50S ribosomal protein L14, chloroplastic OS=Aethionema cordifolium GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = -3 
Query:  169 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 513
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAIPNTPLERSEVIRAVIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
The following BLAST results are available for this feature:
BLAST of CX675026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 440
Match NameE-valueIdentityDescription
RK14_LEPVR8.157e-1133.6150S ribosomal protein L14, chloroplastic OS=Lepidi... [more]
RK14_LACSA8.157e-1135.2950S ribosomal protein L14, chloroplastic OS=Lactuc... [more]
RK14_HELAN8.157e-1135.2950S ribosomal protein L14, chloroplastic OS=Helian... [more]
RK14_CRUWA8.157e-1133.6150S ribosomal protein L14, chloroplastic OS=Crucih... [more]
RK14_CHAGL8.157e-1131.9350S ribosomal protein L14, chloroplastic OS=Chaeto... [more]
RK14_CAPBU8.157e-1133.6150S ribosomal protein L14, chloroplastic OS=Capsel... [more]
RK14_BARVE8.157e-1133.6150S ribosomal protein L14, chloroplastic OS=Barbar... [more]
RK14_ARATH8.157e-1133.6150S ribosomal protein L14, chloroplastic OS=Arabid... [more]
RK14_AETGR8.157e-1133.6150S ribosomal protein L14, chloroplastic OS=Aethio... [more]
RK14_AETCO8.157e-1133.6150S ribosomal protein L14, chloroplastic OS=Aethio... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59C02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59C02-E3-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675026 ID=CX675026; Name=CX675026; organism=Citrus sinensis; type=EST; length=599bp
TTTTTTTCAACAAAACTCCAAACTTTCATACCACTTCCAAAACTAGAACA
ACAAAATCATACAGAAAGTTCACAGAAAAGCTTTACTCCTTCCTACTATG
AAACTTCACCAGAATTCTTTTTAGTGCAACAAAAAGGATGATATAGGTTA
TCGGTCTTGAATGTCTTAAACGATAGCATTGGCTGCACTTGCAATCCTCG
GCCACAAATCAGCACACTCTTTACCAATTGGACCGGTGATGGCAGAACCC
TTCATTTCTCCCTTTGGATTCACAATAACACCTGCATTATCTTCAAAGTA
CATGAAGACACCATCCTTTCTGCGCCATGGCTTGCGCTGCCTTACAATGA
CGGCGGGCATCACCTTCTTCCTAAGATCAGGCTTCCCTTTCTTCACAGTA
GCCATAACCATGTCTCCAACACAGGCAGACGGCAAACGGTTGAGGCGACC
TTTGATTCCCTTAACTGAGATGATGTAAAGGTTCTTTGCCCCAGTGTTGT
CAGCACAGTTCACAGTTGCTGCCACTGGCAAACCCAGTGACATCCTGAAC
TTGTTACCTGCTGATCCTCCGCGTCCTCGCTTCGACATTTTCGCACCTA
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