CN186497

Overview
NameCN186497
Unique NameCN186497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186497 vs. ExPASy Swiss-Prot
Match: FADA_SHEB5 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.386e-26
Identity = 67/147 (45.58%), Postives = 90/147 (61.22%), Query Frame = -3
Query:  258 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLD---PEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 689
            SDGA A+L+M+ S A   GLPI    R+ A  G D AIM           +  AG+ + D+D+ E+NEAFA+Q + C   LGL     +KIN+NGGA+A+GHPLG +GAR   TL++ M+   +D   G+ +MCIG G G A VFER
Sbjct:  242 SDGASAMLIMEESKARALGLPIRARIRSMAVAGCDAAIMGYGPVPATQKALARAGITVADLDVIELNEAFAAQSLPCVKDLGLADVVDDKINLNGGAIALGHPLGCSGARISTTLINLME--DKDATLGLATMCIGLGQGIATVFER 386          
BLAST of CN186497 vs. ExPASy Swiss-Prot
Match: THLA_CLOD6 (Acetyl-CoA acetyltransferase OS=Clostridium difficile (strain 630) GN=thlA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.811e-26
Identity = 61/144 (42.36%), Postives = 89/144 (61.81%), Query Frame = -3
Query:  258 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 689
            +DGA  +++M +  A   G+  L    ++   GVDP IM           +++A + ++DIDL E NEAFA+Q V     L +D  K+NVNGGA+AIGHP+G +GAR + TLL+EMKR  RD + G+ ++CIG GMG   + +R
Sbjct:  250 NDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGYGPVPATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSGARILTTLLYEMKR--RDAKTGLATLCIGGGMGTTLIVKR 391          
BLAST of CN186497 vs. ExPASy Swiss-Prot
Match: FADA_VIBC3 (3-ketoacyl-CoA thiolase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=fadA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.365e-26
Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = -3
Query:  258 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL---DPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 689
            SDGA A+L+M    A   GL I    +  A  G DP+IM           +K AGL + D+D+ E+NEAFA+Q + C   LGL     +K+N+NGGA+A+GHPLG +G R   TL++ M+   +D ++G+ +MCIG G G A +FER
Sbjct:  242 SDGASAMLVMSEQKAKALGLTIRARIKAMAVAGCDPSIMGYGPVPATHKALKRAGLTMQDMDVVELNEAFAAQSLPCAKDLGLLDMMDDKVNLNGGAIALGHPLGCSGTRISTTLINLME--AKDAKYGLATMCIGLGQGIATIFER 386          
BLAST of CN186497 vs. ExPASy Swiss-Prot
Match: FADA_PSESM (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. tomato GN=fadA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.088e-26
Identity = 69/147 (46.94%), Postives = 89/147 (60.54%), Query Frame = -3
Query:  258 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXVKSAGLQLDDIDLFEINEAFASQFVYCRNKLG-LDP--EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 689
            +DGA  +++M    A   G+  L V R+ A  GVDPAIM           +K AGL + DID FE+NEAFA+Q +     L  LD   EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G    FGV +MCIG G G A VFER
Sbjct:  246 TDGASCMIVMSAQRAQDLGIQPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLSISDIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGVSTMCIGLGQGIATVFER 390          
BLAST of CN186497 vs. ExPASy Swiss-Prot
Match: FADA_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.268e-26
Identity = 63/147 (42.86%), Postives = 90/147 (61.22%), Query Frame = -3
Query:  258 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL---DPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 689
            SDGA A+L+M  + A   GLPI    +  A  G DP+IM           +  AG+ +DD+ + E+NEAFA+Q +     LGL     EK+N+NGGA+A+GHPLG +G+R   +L+H M+   ++ R+G+ +MCIG G G A VFER
Sbjct:  242 SDGASAMLVMSEAKAKELGLPIRARIKAMAVAGCDPSIMGYGPVPASKKALAQAGITIDDLGVVELNEAFAAQSLPVMKDLGLMDVVDEKVNLNGGAIALGHPLGCSGSRISTSLIHLME--DKNVRYGLATMCIGLGQGIATVFER 386          
BLAST of CN186497 vs. ExPASy Swiss-Prot
Match: FADA_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.268e-26
Identity = 68/147 (46.26%), Postives = 87/147 (59.18%), Query Frame = -3
Query:  258 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL---DPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 689
            SDGA A+L+M    A   GL      R+ A  G D AIM           +K AGL + DIDL E+NEAFA+Q + C   LGL     EK+N+NGGA+A+GHPLG +G+R   TL+H M+   +D   G+ +MCIG G G A VFER
Sbjct:  242 SDGASAMLVMSADRAKALGLTPRVRVRSMAVAGCDAAIMGYGPVPATQKALKRAGLTIGDIDLVELNEAFAAQSLPCVKDLGLLDVAEEKVNLNGGAIALGHPLGCSGSRISTTLIHLMEE--KDANLGLATMCIGLGQGIATVFER 386          
BLAST of CN186497 vs. ExPASy Swiss-Prot
Match: FADA_VIBCH (3-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.880e-26
Identity = 62/147 (42.18%), Postives = 89/147 (60.54%), Query Frame = -3
Query:  258 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL---DPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 689
            SDGA A+L+M    A   GL I    +  A  G DP+IM           ++ AGL + D+D+ E+NEAFA+Q + C   LGL     +K+N+NGGA+A+GHPLG +G R   TL++ M+   +D ++G+ +MCIG G G A +FER
Sbjct:  242 SDGASAMLVMSEQKAKALGLTIRARIKAMAVAGCDPSIMGYGPVPATHKALQRAGLTMQDMDVVELNEAFAAQSLPCAKDLGLLEMMDDKVNLNGGAIALGHPLGCSGTRISTTLINLME--AKDAKYGLATMCIGLGQGIATIFER 386          
BLAST of CN186497 vs. ExPASy Swiss-Prot
Match: FADA_SHESW (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain W3-18-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.880e-26
Identity = 66/147 (44.90%), Postives = 89/147 (60.54%), Query Frame = -3
Query:  258 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLD---PEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 689
            SDGA A+L+M+ S A    LPI    R+ A  G D AIM           +  AG+ + D+D+ E+NEAFA+Q + C   LGL     +KIN+NGGA+A+GHPLG +GAR   TL++ M+   +D   G+ +MCIG G G A VFER
Sbjct:  242 SDGASAMLIMEESKARALSLPIRARIRSMAVAGCDAAIMGYGPVPATQKALARAGITVADLDVIELNEAFAAQSLPCVKDLGLADVVDDKINLNGGAIALGHPLGCSGARISTTLINLME--DKDATLGLATMCIGLGQGIATVFER 386          
BLAST of CN186497 vs. ExPASy Swiss-Prot
Match: FADA_PSEPF (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.880e-26
Identity = 68/147 (46.26%), Postives = 90/147 (61.22%), Query Frame = -3
Query:  258 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXVKSAGLQLDDIDLFEINEAFASQFVYCRNKLG-LDP--EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 689
            +DGA  +++M    A   G+  L V R+ A  GVDPAIM           +K AGL ++DID FE+NEAFA+Q +     L  LD   EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G    FGV +MCIG G G + VFER
Sbjct:  246 TDGASCMIVMSAQRAQDLGIQPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLGINDIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGVATMCIGLGQGISTVFER 390          
BLAST of CN186497 vs. ExPASy Swiss-Prot
Match: FADA_MARMS (3-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain MWYL1) GN=fadA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.880e-26
Identity = 67/147 (45.58%), Postives = 87/147 (59.18%), Query Frame = -3
Query:  258 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXVKSAGLQLDDIDLFEINEAFASQFVYCRNKLG---LDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 689
            SDGA A+L+M    A   GL  +   R+ A  G DPAIM           +K AGL + DID+ E+NEAFA+Q +     LG   L  +K+N+NGGA+A+GHPLG +G R   TLL+ M  R +D   G+ +MCIG G G A VFER
Sbjct:  246 SDGASAMLMMSAKKAEELGLTPIAKVRSMAVAGCDPAIMGYGPVPATKKALKRAGLTIADIDIVELNEAFAAQSIPVLKDLGLLDLVDDKVNLNGGAIALGHPLGCSGTRISTTLLNVM--REKDATVGLATMCIGMGQGIATVFER 390          
The following BLAST results are available for this feature:
BLAST of CN186497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
FADA_SHEB51.386e-2645.583-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
THLA_CLOD61.811e-2642.36Acetyl-CoA acetyltransferase OS=Clostridium diffic... [more]
FADA_VIBC32.365e-2642.863-ketoacyl-CoA thiolase OS=Vibrio cholerae serotyp... [more]
FADA_PSESM3.088e-2646.943-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSEHT5.268e-2642.863-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]
FADA_AERS45.268e-2646.263-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]
FADA_VIBCH6.880e-2642.183-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA... [more]
FADA_SHESW6.880e-2644.903-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_PSEPF6.880e-2646.263-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_MARMS6.880e-2645.583-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002P23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186497 ID=CN186497; Name=CN186497; organism=Citrus sinensis; type=EST; length=691bp
AGTTGACGATATTTAAATTAATCATATCAAAACCGAAGATCCTGACAGCT
GTGTGACCTGTGGTCGGCTTTGTGATCACAACAAAGCAATCTTATTACAT
ATAACTGTTCATTAAAAATACTCGGATTCCAAACACAATATGATCGTTCC
GCGAGAACATGCTGCAGCAGACAAATGGTAATCTACAGAACATCCTTAGA
TAAGAAATTGTTGCTTTCCACTTTCCTGACATTGCAAAGCTCATCGGCAC
AGTCACCTCTTTCGAAAACAGCTGCTGCCCCCATTCCTGTGCCTATGCAC
ATTGATATCACTCCAAAGCGGCAGTCTCTGCCTCGCCTCTTCATCTCATG
CAATAGAGTTGCAACGCAGCGTGCACCTGTTGTGCCCAGAGGATGCCCAA
TGGCAAGTGCACCTCCATTCACATTGATCTTTTCTGGATCGAGACCCAGC
TTGTTACGGCAATATACAAACTGGGATGCAAATGCCTCATTTATCTCAAA
AAGATCAATATCGTCAAGTTGAAGACCCGCAGACTTAACTGCAGCTGGAA
TTGCCACAGCTGGGCCAACACCCATGATGGCAGGATCCACACCAACAGCA
GCAAAGGTCCTGAATACACCAAGAATGGGTAGGCCTTTACGCATGGCAAC
GCTTCTCTTCATAAGCAGAACAGCCCCAGCACCATCACTCA
back to top