CN186495

Overview
NameCN186495
Unique NameCN186495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_METM6 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps7p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.526e-33
Identity = 75/158 (47.47%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  220 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAEC 693
            ++KLF +W  E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N KT+A+C
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYVSV----TPVLVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSAHKNKKTVAQC 155          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_METM5 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps7p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.526e-33
Identity = 76/158 (48.10%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  220 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAEC 693
            ++KLF +W  E V V D SL  YI V        VPHTAGR + K F KA+  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N KT+A+C
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYISVAPV----LVPHTAGRNTKKSFDKAKMNIVERLANKLMANQNNTGKKHETLAIVEEALAIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASDSAHKNKKTVAQC 155          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_SULAC (30S ribosomal protein S7P OS=Sulfolobus acidocaldarius GN=rps7p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.911e-33
Identity = 77/157 (49.04%), Postives = 105/157 (66.88%), Query Frame = 1
Query:  220 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAE 690
            +VK+F +W  + V+V D SL  YI + +     Y+PHT GR+  +RF K++ PIVERL N+LM  GRN GKK++A  IVK   +II + T QNPIQV+V A+ N+ PRE+ TRI   G+V   AVD++P RRV+ A+  L TGA E++F N K I E
Sbjct:   11 NVKVFGKWDTK-VEVRDPSLKKYIDLMSI----YLPHTGGRHEHRRFGKSRIPIVERLINNLMRPGRNKGKKMLAYNIVKTTFDIIAVKTGQNPIQVLVRAIENAAPREEVTRIMYGGIVYYVAVDVAPQRRVDLALRHLVTGASEASFNNPKPIEE 162          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_METM7 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps7p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.911e-33
Identity = 75/158 (47.47%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  220 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAEC 693
            ++KLF +W  E V V D SL  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N GKK   + IV+ A+ II   T +NP+QV+VDA+ NSGPRE+ TRI   G+   Q+VD+SP RR++ A   +  GA +SA +N KT+A+C
Sbjct:    2 EIKLFGKWDSETVTVKDPSLKSYVSVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQENTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPREETTRISYGGIAFLQSVDVSPSRRLDTAFRNIALGASQSAHKNKKTVAQC 155          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_METTH (30S ribosomal protein S7P OS=Methanobacterium thermoautotrophicum GN=rps7p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.236e-31
Identity = 69/155 (44.52%), Postives = 106/155 (68.39%), Query Frame = 1
Query:  229 LFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAEC 693
            +F++W  ++V+V D+ L+ YI +    ++  VPHT GR+  ++F K++  IVERL N +M   RN+GKK  A +IV+ A EII+  T +NP+Q++V AV N+ PRE+ TRI   G+  + AVDISP RRV+ ++  +T GA ++AF+N K+I EC
Sbjct:    4 VFDKWELDEVKVEDMGLAKYICL----DSILVPHTMGRHVKRQFAKSKVSIVERLINKVMRTERNSGKKNKAYKIVQEAFEIINRRTKENPVQILVKAVENTSPREETTRIKYGGIGYQVAVDISPQRRVDLSLGFITRGAMQAAFKNKKSIEEC 154          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_METST (30S ribosomal protein S7P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps7p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31
Identity = 71/156 (45.51%), Postives = 104/156 (66.67%), Query Frame = 1
Query:  226 KLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAEC 693
            KLF++W   +V V D+ L +Y+ +    +   VPHT GR+  ++F K++  IVERL N +M   RN+GKK  A  IV+ A+EII+  T QNP+QV+V AV N+ PRE+ TRI   G+  + AVDI+P RRV+ ++  +T GA +SAF+N K+ A+C
Sbjct:    4 KLFDKWDVTEVTVEDMGLQNYVCL----DEIVVPHTMGRHVKRQFAKSKVSIVERLMNKIMRTERNSGKKNKAYSIVEDALEIINNKTKQNPVQVLVKAVENTAPREETTRIKYGGIGYQIAVDIAPQRRVDLSLGFITKGAMQSAFKNKKSAAQC 155          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_META3 (30S ribosomal protein S7P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps7p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.226e-31
Identity = 68/158 (43.04%), Postives = 103/158 (65.19%), Query Frame = 1
Query:  220 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAEC 693
            ++KLFN+W   ++ V D SL  YI ++      +VPHT+GR S + F KA+  IVERL N+LM   +N G+K + + IV+ A EII   T++NP++V+V+A+ N GPRE+ TRI   G+   Q+VD+SP RR++ A+  +  G   SA +N K+ A+C
Sbjct:    2 EIKLFNKWDTTEIVVKDPSLRHYINLEPI----FVPHTSGRNSGRMFEKAKMNIVERLVNNLMRAEQNTGQKQVTLSIVEEAFEIIEKRTNENPVKVLVEALENGGPREETTRISYGGIAFLQSVDVSPSRRLDTALRNIAIGTLNSAHKNKKSAAQC 155          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_KORCO (30S ribosomal protein S7P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.437e-31
Identity = 75/174 (43.10%), Postives = 107/174 (61.49%), Query Frame = 1
Query:  205 SQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLM------------MHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAE 690
            S P+  +KLF RW+++D+++ + +L + I ++      Y+PHT GR+  K+F K + PIVERL N LM            ++ +N GKKL A+R VK+A EII L T +NPIQV +DA+ NS  RE+ TRI   GV    AVD SP R V+ AI  +  GA   AFR+ +++AE
Sbjct:    5 SNPETQIKLFGRWSYDDLRIENAALKNVISLKPV----YLPHTGGRHEHKKFGKLEIPIVERLVNRLMGQAMNSGSRKDHVNSKNQGKKLKAMRTVKYAFEIIELRTGKNPIQVFLDAIENSIIREEVTRIMYGGVSYFHAVDTSPSRMVDLAIRHIAQGAAMKAFRSPRSLAE 174          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_HALSA (30S ribosomal protein S7P OS=Halobacterium salinarium GN=rps7p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 70/167 (41.92%), Postives = 101/167 (60.48%), Query Frame = 1
Query:  190 QSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAE 690
            +S+D  +   + KLF +W   ++   D S   Y+ V      T V HT GR++ K+F+K++  IVERL N LM  G N GKK  A++IV+ A +I+H  TD+NPIQV+V AV N+ PRE+  R+   G+   QAVD +P RRV+QA+  L  GA  ++F+     AE
Sbjct:   17 ESEDTQEVAANAKLFGKWDVAEIHYEDPSTRRYLAV------TPVAHTMGRHAQKQFKKSEISIVERLANRLMKTGANAGKKQQALKIVRDAFDIVHERTDENPIQVLVSAVENAAPREETVRLKYGGISVPQAVDTAPQRRVDQALKFLADGAHSASFKTPTDAAE 177          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_CALMQ (30S ribosomal protein S7P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps7p PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.117e-30
Identity = 66/157 (42.04%), Postives = 96/157 (61.15%), Query Frame = 1
Query:  223 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAEC 693
            + LF +W   DV + D  L  Y+ ++       +PHT G+Y  ++F KA  PI+ER+ N LM  GRN GKK  A +I+K A +II++ T +NP+QV VDAV+N  PRE+ TR+   G+    +VD+ P RR++ AI  +  GAR  +F N + I EC
Sbjct:   40 ILLFGKWNVNDVVIRDPGLRRYMCLKPM----LLPHTEGKYQNRKFGKAMIPIIERMMNQLMKPGRNAGKKQKAYKILKTAFDIIYVATGKNPVQVFVDAVVNVAPREEITRVIYGGIAYPVSVDVGPTRRLDLAIRWIAEGARACSFNNPRPIEEC 192          
The following BLAST results are available for this feature:
BLAST of CN186495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_METM64.526e-3347.4730S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM54.526e-3348.1030S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_SULAC5.911e-3349.0430S ribosomal protein S7P OS=Sulfolobus acidocalda... [more]
RS7_METM75.911e-3347.4730S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METTH4.236e-3144.5230S ribosomal protein S7P OS=Methanobacterium ther... [more]
RS7_METST7.226e-3145.5130S ribosomal protein S7P OS=Methanosphaera stadtm... [more]
RS7_META37.226e-3143.0430S ribosomal protein S7P OS=Methanococcus aeolicu... [more]
RS7_KORCO9.437e-3143.1030S ribosomal protein S7P OS=Korarchaeum cryptofil... [more]
RS7_HALSA2.746e-3041.9230S ribosomal protein S7P OS=Halobacterium salinar... [more]
RS7_CALMQ6.117e-3042.0430S ribosomal protein S7P OS=Caldivirga maquilinge... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002P22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186495 ID=CN186495; Name=CN186495; organism=Citrus sinensis; type=EST; length=694bp
ATTACTCAGCGAGCGGCAGCCGATTCTTATTATTCCCTTTTCAAACCCCT
TCAGACAAACTAACGCACGCTTTCTTTTTCTTCCGCTTTCTTCTCCATCG
CTGATCATCTTGATTGCTTTTTTAGTTCGAAAAACATTGTCTTTTAATAT
TTTGTTGTGTTGGTGAGAATGGCGACTGCTGTAGTGACACAATCTCAAGA
CCCATCACAGCCTCAATACGATGTGAAACTCTTCAATAGGTGGACTTTCG
AGGATGTTCAGGTCAATGACATTTCATTGAGTGATTATATTGGAGTCCAA
GCAGCAAAAAATGCAACCTATGTACCTCACACAGCTGGGAGGTACTCAGT
GAAGCGGTTTAGGAAGGCACAGTGCCCAATTGTTGAGAGGCTCACAAACT
CACTGATGATGCATGGAAGAAACAATGGCAAGAAATTGATGGCCGTCAGG
ATTGTCAAGCACGCCATGGAAATCATTCACCTTTTGACCGACCAGAACCC
AATTCAGGTCATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAGACG
CTACCCGCATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCAGTTGATATT
TCCCCATTGCGCCGTGTGAATCAAGCAATCTATTTGCTCACCACTGGTGC
TCGTGAATCCGCTTTCCGTAATATCAAGACTATTGCGGAATGTT
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