CN186495

Overview
NameCN186495
Unique NameCN186495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_CENSY (30S ribosomal protein S7P OS=Cenarchaeum symbiosum GN=rps7p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.847e-27
Identity = 71/163 (43.56%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  229 LFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMH---------GRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAE 690
            LF +W   D++V D  L   I ++       +P+T GR ++KRF KA   IVERL N  MMH         GR  GKK+ ++  VK A EII+L T +NP++V+V AV NS P ED TRI   G V   +VD+SPLRRV+ A+  +  G +E+AFR  K++ E
Sbjct:    9 LFRKWDLSDIEVVDPGLKTAISLRKMT----LPYTYGRSALKRFNKADANIVERLANK-MMHFGKKYAKNTGRMAGKKMGSINTVKTAFEIINLKTGRNPVEVLVRAVENSAPNEDTTRIVYGGTVYHVSVDVSPLRRVDLALRFIADGVKEAAFRKPKSLEE 166          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_HALMO (30S ribosomal protein S7P OS=Halococcus morrhuae GN=rps7p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.267e-27
Identity = 65/167 (38.92%), Postives = 100/167 (59.88%), Query Frame = 1
Query:  187 TQSQDPSQPQ-----YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRN 672
            +++ +P QP         KLF RW    ++ +D S   YI V      T V HT GR++ K+F+K++  IVERL N LM    N GKK  A RIV++A ++I   T+++P+QV+V AV N+ PRE+  R+   G+   QAVD++P RRV+QA+  +  G   ++F++
Sbjct:    4 SEAPEPDQPAGAEEATGAKLFERWDVTGIEYDDPSTERYITV------TPVEHTMGRHAGKQFQKSEISIVERLINRLMQTDENTGKKQQATRIVRNAFDLIAERTEESPVQVLVSAVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIAEGTHSASFKS 164          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_THEON (30S ribosomal protein S7P OS=Thermococcus onnurineus (strain NA1) GN=rps7p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.842e-26
Identity = 72/177 (40.68%), Postives = 99/177 (55.93%), Query Frame = 1
Query:  208 QPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAE 690
            QP+ ++K+  RW+ EDV VND SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                GKK+ A  +VK A  II   T QNPIQV + A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  + A+
Sbjct:   11 QPK-ELKVMGRWSVEDVVVNDPSLRPYINLEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASSHKVGGHFMRREHRSLMGKKMKAYEVVKEAFMIIERRTKQNPIQVFIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQ 182          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_METB6 (30S ribosomal protein S7P OS=Methanoregula boonei (strain 6A8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.842e-26
Identity = 64/166 (38.55%), Postives = 99/166 (59.64%), Query Frame = 1
Query:  181 VVTQSQDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIK 678
            V  Q +  + PQ    LFN+W   +V+V D SL  Y+ +        +PH+ G++S + F KA   IVERL N LM    N GKK +A+ IV+ A E+I+  T +NPI+V+V+A+ N+GPRE+  R+   G+   ++VD +PLRRV+ AI  +     +S+ ++ K
Sbjct:    6 VKAQPEGDAAPQSKALLFNKWDVSEVKVTDPSLVRYVNL----TPQIIPHSCGKFSRQEFNKANMMIVERLINRLMQTENNTGKKQLAIGIVRDAFELINKKTKRNPIEVLVEAIGNTGPREETVRLKYGGINVPKSVDTAPLRRVDSAIGFIAEAVWKSSRKSKK 167          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_PYRKO (30S ribosomal protein S7P OS=Pyrococcus kodakaraensis GN=rps7p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 71/173 (41.04%), Postives = 95/173 (54.91%), Query Frame = 1
Query:  220 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAE 690
            +VK+  RW+ EDV V D SL  YI +    +A  +PH+ GRY+ K F KA   IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T I   G+    +VD+SPLRR++ A+  +  GA    +RN  T A+
Sbjct:   14 EVKVMGRWSVEDVTVEDPSLKPYINL----DARILPHSHGRYAKKPFGKANVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVKAIENSAPREDTTTIAFGGIRYHMSVDVSPLRRLDIALKNIALGASIKCYRNKTTYAQ 182          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_THECE (30S ribosomal protein S7P OS=Thermococcus celer GN=rps7p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.142e-26
Identity = 72/177 (40.68%), Postives = 98/177 (55.37%), Query Frame = 1
Query:  208 QPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAE 690
            QP+ ++K+  RW+ EDV VND SL  YI ++A      +PH+ GR++ K F KA   IVERL N +M  G  +                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T I   G+    AVD+SPLRR++ A+  +  GA    +RN  + A+
Sbjct:   11 QPK-ELKVMGRWSVEDVTVNDPSLRPYINLEAR----LLPHSHGRHAKKAFGKANVHIVERLINKVMRSGATSHKAGGHFMRRDDRSLMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQ 182          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_NATPD (30S ribosomal protein S7P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps7p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 63/174 (36.21%), Postives = 99/174 (56.90%), Query Frame = 1
Query:  187 TQSQDPSQP------QYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAE 690
            +++ +P  P      +   +LF  W   +++ +D S   YI V      T + HT GR+S K+F+K++  IVERL N LM    N GKK  A +IV+ A +I+   TD+NP+QV+V AV N+GPRE+  R+   G+   +AVD++P RRV+ A+  +  G    +F+    + E
Sbjct:    3 SEAPEPDAPASTDDERVSAQLFGEWEIGEIEYDDPSTRRYITV------TPIAHTMGRHSEKQFKKSEISIVERLINRLMQTDENTGKKQQATKIVREAFDIVAERTDENPVQVLVTAVENAGPREETVRLKYGGISVPKAVDVAPQRRVDLALKFIAEGTYNDSFKTTTPVEE 170          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_PYRFU (30S ribosomal protein S7P OS=Pyrococcus furiosus GN=rps7p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.999e-26
Identity = 68/174 (39.08%), Postives = 97/174 (55.75%), Query Frame = 1
Query:  217 YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAE 690
            +++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +RN  + AE
Sbjct:   13 HEIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEQRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRNKMSFAE 182          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_THEAC (30S ribosomal protein S7P OS=Thermoplasma acidophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 60/155 (38.71%), Postives = 96/155 (61.94%), Query Frame = 1
Query:  229 LFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAEC 693
            LFN++    V+++D  +  YI V++A N     HT GR+S     K    +VERL N LM   +  GKK  A +I + A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  + TGA  ++F++ K+I  C
Sbjct:    2 LFNKYDVNAVEIHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRSEKWTGKKYSAYKITEEAFQIIAEKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNC 152          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_THEVO (30S ribosomal protein S7P OS=Thermoplasma volcanium GN=rps7p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25
Identity = 61/155 (39.35%), Postives = 96/155 (61.94%), Query Frame = 1
Query:  229 LFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAEC 693
            LF+++    V+V+D  +  YI V++A N     HT GR+S     K    +VERL N LM   +  GKK  A +I K A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  + TGA  ++F++ K+I  C
Sbjct:    2 LFDKYDVNSVEVHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRTEKWTGKKYSAYKITKDAFDIIADKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNC 152          
The following BLAST results are available for this feature:
BLAST of CN186495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_CENSY4.847e-2743.5630S ribosomal protein S7P OS=Cenarchaeum symbiosum... [more]
RS7_HALMO8.267e-2738.9230S ribosomal protein S7P OS=Halococcus morrhuae G... [more]
RS7_THEON1.842e-2640.6830S ribosomal protein S7P OS=Thermococcus onnurine... [more]
RS7_METB61.842e-2638.5530S ribosomal protein S7P OS=Methanoregula boonei ... [more]
RS7_PYRKO2.405e-2641.0430S ribosomal protein S7P OS=Pyrococcus kodakaraen... [more]
RS7_THECE3.142e-2640.6830S ribosomal protein S7P OS=Thermococcus celer GN... [more]
RS7_NATPD4.103e-2636.2130S ribosomal protein S7P OS=Natronomonas pharaoni... [more]
RS7_PYRFU6.999e-2639.0830S ribosomal protein S7P OS=Pyrococcus furiosus G... [more]
RS7_THEAC1.559e-2538.7130S ribosomal protein S7P OS=Thermoplasma acidophi... [more]
RS7_THEVO2.036e-2539.3530S ribosomal protein S7P OS=Thermoplasma volcaniu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002P22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186495 ID=CN186495; Name=CN186495; organism=Citrus sinensis; type=EST; length=694bp
ATTACTCAGCGAGCGGCAGCCGATTCTTATTATTCCCTTTTCAAACCCCT
TCAGACAAACTAACGCACGCTTTCTTTTTCTTCCGCTTTCTTCTCCATCG
CTGATCATCTTGATTGCTTTTTTAGTTCGAAAAACATTGTCTTTTAATAT
TTTGTTGTGTTGGTGAGAATGGCGACTGCTGTAGTGACACAATCTCAAGA
CCCATCACAGCCTCAATACGATGTGAAACTCTTCAATAGGTGGACTTTCG
AGGATGTTCAGGTCAATGACATTTCATTGAGTGATTATATTGGAGTCCAA
GCAGCAAAAAATGCAACCTATGTACCTCACACAGCTGGGAGGTACTCAGT
GAAGCGGTTTAGGAAGGCACAGTGCCCAATTGTTGAGAGGCTCACAAACT
CACTGATGATGCATGGAAGAAACAATGGCAAGAAATTGATGGCCGTCAGG
ATTGTCAAGCACGCCATGGAAATCATTCACCTTTTGACCGACCAGAACCC
AATTCAGGTCATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAGACG
CTACCCGCATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCAGTTGATATT
TCCCCATTGCGCCGTGTGAATCAAGCAATCTATTTGCTCACCACTGGTGC
TCGTGAATCCGCTTTCCGTAATATCAAGACTATTGCGGAATGTT
back to top