CN186495

Overview
NameCN186495
Unique NameCN186495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_PYRHO (30S ribosomal protein S7P OS=Pyrococcus horikoshii GN=rps7p PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.659e-25
Identity = 68/174 (39.08%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  217 YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAE 690
            +++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISPLRR++ A+  +  GA    +R   + AE
Sbjct:   16 HEIKVMGRWSTEDVEVKDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAE 185          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_PYRAB (30S ribosomal protein S7P OS=Pyrococcus abyssi GN=rps7p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 67/174 (38.51%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  217 YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAE 690
            +++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +R   + AE
Sbjct:   13 HEIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCYRTKMSFAE 182          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_HALWD (30S ribosomal protein S7P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps7p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 58/164 (35.37%), Postives = 93/164 (56.71%), Query Frame = 1
Query:  199 DPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAE 690
            D      + KLF  W   +++  D S   YI V      T + HT GR++ K+F K++  +VERL N LM    N G K   + IV+ A + IH  T++NP+QV+V  V N+ PRE+  R+   G+   QAVD++P RRV+QA+  +  G +  ++++ ++ A+
Sbjct:   37 DTDTASANAKLFGEWDVSEIEYEDPSTQRYITV------TPIAHTMGRHAAKQFEKSKISVVERLINRLMQTEDNTGHKQKTMNIVEDAFDTIHNRTEENPVQVLVRGVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIADGTQRGSYKSAQSAAD 194          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_METLZ (30S ribosomal protein S7P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps7p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.724e-24
Identity = 56/136 (41.18%), Postives = 86/136 (63.24%), Query Frame = 1
Query:  223 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI 630
            + LFN+W   +V V D  +  Y+ +     +T VP + GR + ++F K++  IVERL N LM    N GKK+M  ++V  A ++I+  T QNP+QV+VDAV N+GPRE+  R+   G+   ++VD +P+RRVN A+
Sbjct:   10 ILLFNKWDMSEVVVKDAGMVRYVTI----TSTEVPSSCGRLTQQQFTKSEMAIVERLINRLMQQEYNTGKKMMCTKMVMDAFDVINKKTKQNPLQVLVDAVANAGPREETVRLKYGGINVPKSVDSAPIRRVNTAL 141          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_PICTO (30S ribosomal protein S7P OS=Picrophilus torridus GN=rps7p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.906e-23
Identity = 57/158 (36.08%), Postives = 92/158 (58.23%), Query Frame = 1
Query:  220 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAEC 693
            D  +  ++    +Q++D+ L+ YI +    N+ +  HT GRYS     K     +ERL N LM   +  GKK  A R++K A EI+   T QNP+QV+++A+ NS PRE+ TR+   G+   ++VD+SP RR+++A+  +  GA   +F++   I EC
Sbjct:    2 DRLIMGKYDVSGIQIHDMGLAKYINL----NSYFNLHTGGRYSNYSAGKRNVNTIERLLNKLMRTEKWTGKKYSAYRVLKEAFEIVEQKTKQNPVQVLINAIENSAPREEVTRLKYGGIAVPKSVDVSPSRRLDEALRNICIGATSKSFKSKVPIEEC 155          
BLAST of CN186495 vs. ExPASy Swiss-Prot
Match: RS7_NANEQ (30S ribosomal protein S7P OS=Nanoarchaeum equitans GN=rps7p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22
Identity = 63/154 (40.91%), Postives = 83/154 (53.90%), Query Frame = 1
Query:  223 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGR-----------NNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGA 651
            +KLF RW +EDV V D  L DYI ++       +P++ GR+   RF KA+ PI+ERL   LM  G              GKK  A +I+    EII   T QNP++V V A+ N+ PRE+ T I   G    +AVD SP RRV+ AI  +  GA
Sbjct:    3 MKLFGRWDYEDVTVEDPGLRDYINLKPM----LIPYSGGRHQKHRFGKAKIPIIERLAGRLMTSGHLGKKHKWTSEHQTGKKYNAYKIIIRTFEIIEKRTKQNPLKVFVKAIENAAPREETTTIEYGGARYPKAVDCSPQRRVDLAIRHMVWGA 152          
The following BLAST results are available for this feature:
BLAST of CN186495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_PYRHO2.659e-2539.0830S ribosomal protein S7P OS=Pyrococcus horikoshii... [more]
RS7_PYRAB3.473e-2538.5130S ribosomal protein S7P OS=Pyrococcus abyssi GN=... [more]
RS7_HALWD7.738e-2535.3730S ribosomal protein S7P OS=Haloquadratum walsbyi... [more]
RS7_METLZ1.724e-2441.1830S ribosomal protein S7P OS=Methanocorpusculum la... [more]
RS7_PICTO1.906e-2336.0830S ribosomal protein S7P OS=Picrophilus torridus ... [more]
RS7_NANEQ2.107e-2240.9130S ribosomal protein S7P OS=Nanoarchaeum equitans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002P22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186495 ID=CN186495; Name=CN186495; organism=Citrus sinensis; type=EST; length=694bp
ATTACTCAGCGAGCGGCAGCCGATTCTTATTATTCCCTTTTCAAACCCCT
TCAGACAAACTAACGCACGCTTTCTTTTTCTTCCGCTTTCTTCTCCATCG
CTGATCATCTTGATTGCTTTTTTAGTTCGAAAAACATTGTCTTTTAATAT
TTTGTTGTGTTGGTGAGAATGGCGACTGCTGTAGTGACACAATCTCAAGA
CCCATCACAGCCTCAATACGATGTGAAACTCTTCAATAGGTGGACTTTCG
AGGATGTTCAGGTCAATGACATTTCATTGAGTGATTATATTGGAGTCCAA
GCAGCAAAAAATGCAACCTATGTACCTCACACAGCTGGGAGGTACTCAGT
GAAGCGGTTTAGGAAGGCACAGTGCCCAATTGTTGAGAGGCTCACAAACT
CACTGATGATGCATGGAAGAAACAATGGCAAGAAATTGATGGCCGTCAGG
ATTGTCAAGCACGCCATGGAAATCATTCACCTTTTGACCGACCAGAACCC
AATTCAGGTCATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAGACG
CTACCCGCATTGGATCTGCTGGTGTTGTTAGGCGTCAGGCAGTTGATATT
TCCCCATTGCGCCGTGTGAATCAAGCAATCTATTTGCTCACCACTGGTGC
TCGTGAATCCGCTTTCCGTAATATCAAGACTATTGCGGAATGTT
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