CX675019

Overview
NameCX675019
Unique NameCX675019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PHSG_HAEIN (Glycogen phosphorylase OS=Haemophilus influenzae GN=glgP PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.548e-41
Identity = 91/199 (45.73%), Postives = 126/199 (63.32%), Query Frame = -2
Query:  221 LKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFVPDARFEEVKKFVKSGVFG---SYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 802
            LKV+F+P+Y+VS+A+L+IPA+++S+ IS AG EASGTSNMKFA+NG + +GTLDGANVEI + VGE+N F+FG    ++  LR+E  RS   +  DA+   V   +  G F       Y +L+      +G    DY+    DF SY+E Q+ VDE Y  + +W   +I N      FSSDRTI+EYA  IW + PV+L
Sbjct:  627 LKVVFIPNYSVSLAQLIIPAADISEQISLAGTEASGTSNMKFALNGALTLGTLDGANVEILENVGEDNIFIFGNTVEQVEQLRREGYRSFEYYQNDAQLRTVVDQIIEGKFSPEDPQRYHQLL------QGLQYHDYYQAFADFRSYVETQKAVDEKYKQRDQWIESTIQNIVNMGFFSSDRTIKEYAERIWKVEPVQL 819          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PYGM_HUMAN (Glycogen phosphorylase, muscle form OS=Homo sapiens GN=PYGM PE=1 SV=6)

HSP 1 Score: 169.088 bits (427), Expect = 2.640e-41
Identity = 93/200 (46.50%), Postives = 128/200 (64.00%), Query Frame = -2
Query:  230 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK---SGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 811
            GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R  ++  L +     +   D R  E+++ ++   SG F     D   +++  L  +      D F V  D+  Y++CQEKV   Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct:  638 GDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDKLDQRGYNAQEYYD-RIPELRQVIEQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEDYIKCQEKVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 830          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PYGB_HUMAN (Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5)

HSP 1 Score: 168.318 bits (425), Expect = 4.503e-41
Identity = 94/203 (46.31%), Postives = 128/203 (63.05%), Query Frame = -2
Query:  221 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFV---KSGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 811
            GD LKVIF+ +Y VS+AE +IPA++LSQ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E G EN F+FG R  ++  L ++    +   D    E+K+ V    SG F     D   +++  L  +      D F V  D+ +Y++CQ +VD+ Y + K WT+  I N A S KFSSDRTI EYAR+IW + P +L
Sbjct:  638 GDRLKVIFLENYRVSLAEKVIPAADLSQQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGAENLFIFGLRVEDVEALDRKGYNAREYYD-HLPELKQAVDQISSGFFSPKEPDCFKDIVNMLMHH------DRFKVFADYEAYMQCQAQVDQLYRNPKEWTKKVIRNIACSGKFSSDRTITEYAREIWGVEPSDL 833          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PYGM_RABIT (Glycogen phosphorylase, muscle form OS=Oryctolagus cuniculus GN=PYGM PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 5.882e-41
Identity = 92/200 (46.00%), Postives = 128/200 (64.00%), Query Frame = -2
Query:  230 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK---SGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 811
            GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R  ++  L +     +   D R  E+++ ++   SG F     D   +++  L  +      D F V  D+  Y++CQE+V   Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct:  638 GDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQEYYD-RIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEEYVKCQERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 830          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PYGM_MACFA (Glycogen phosphorylase, muscle form OS=Macaca fascicularis GN=PYGM PE=2 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 5.882e-41
Identity = 92/200 (46.00%), Postives = 128/200 (64.00%), Query Frame = -2
Query:  230 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK---SGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 811
            GD L+VIF+ +Y VS++E +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R  ++  L +     +   D R  E+++ ++   SG F     D   +++  L  +      D F V  D+  Y++CQEKV   Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct:  638 GDRLRVIFLENYRVSLSEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDKLDQRGYNAQEYYD-RIPELRQVIEQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEDYIKCQEKVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 830          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PHSM_ECOLI (Maltodextrin phosphorylase OS=Escherichia coli (strain K12) GN=malP PE=1 SV=7)

HSP 1 Score: 167.933 bits (424), Expect = 5.882e-41
Identity = 94/195 (48.21%), Postives = 131/195 (67.18%), Query Frame = -2
Query:  242 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEI-AGLRKERSEGKF-VPDARFEEVKKFVKSGVFG---SYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIW 811
            GD LKV+F+PDY VS AE LIPA+++S+ ISTAG EASGT NMK A+NG + +GTLDGANVEI ++VGEEN F+FG    ++ A L K     K+   D   + V K ++SG +     + +D+++ S+ G +G    D +LV  DF +Y+E Q++VD  Y DQ+ WTR +I+NTA    FSSDR+I++Y   IW
Sbjct:  603 GDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSI-GKQG---GDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIW 793          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PYGM_SHEEP (Glycogen phosphorylase, muscle form OS=Ovis aries GN=PYGM PE=2 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 7.682e-41
Identity = 92/200 (46.00%), Postives = 127/200 (63.50%), Query Frame = -2
Query:  230 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFV---KSGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 811
            GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R  ++  L ++    +   D R  E++  +    SG F     D   +++  L  +      D F V  D+  Y++CQE+V   Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct:  638 GDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVERLDQKGYNAQEYYD-RIPELRHIIDQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEEYVKCQERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 830          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PYGM_BOVIN (Glycogen phosphorylase, muscle form OS=Bos taurus GN=PYGM PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 7.682e-41
Identity = 92/200 (46.00%), Postives = 127/200 (63.50%), Query Frame = -2
Query:  230 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFV---KSGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 811
            GD L+VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R  ++  L ++    +   D R  E++  +    SG F     D   +++  L  +      D F V  D+  Y++CQE+V   Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct:  638 GDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVERLDQKGYNAQEYYD-RIPELRHVIDQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEEYIKCQERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 830          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PYGB_MOUSE (Glycogen phosphorylase, brain form OS=Mus musculus GN=Pygb PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 7.682e-41
Identity = 93/204 (45.59%), Postives = 130/204 (63.73%), Query Frame = -2
Query:  221 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE----RSEGKFVPDARFEEVKKFVKSGVFGSYNYD---ELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 811
            GD L+VIF+ +Y VS+AE +IPA++LSQ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GEEN F+FG R  ++  L ++    R   + +P+ R  +    + SG F   + D   +++  L  +      D F V  D+ +Y++CQ +VD  Y + K WT+  I N A S KFSSDRTI EYAR+IW + P +L
Sbjct:  638 GDRLRVIFLENYRVSLAEKVIPAADLSQQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENLFIFGMRVEDVEALDQKGYNAREFYERLPELR--QAVDQISSGFFSPKDPDCFKDVVNMLMYH------DRFKVFADYEAYIQCQAQVDRLYRNSKEWTKKVIRNIACSGKFSSDRTITEYAREIWGVEPSDL 833          
BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PYGM_RAT (Glycogen phosphorylase, muscle form OS=Rattus norvegicus GN=Pygm PE=2 SV=5)

HSP 1 Score: 167.162 bits (422), Expect = 1.003e-40
Identity = 90/196 (45.92%), Postives = 125/196 (63.78%), Query Frame = -2
Query:  230 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK--SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 811
            GD  +VIF+ +Y VS+AE +IPA++LS+ ISTAG EASGT NMKF +NG + IGT+DGANVE+ +E GE+NFF+FG R  ++  L +     +   D R  E+++ ++  S  F S    +L   +         D F V  D+  Y++CQ+KV E Y + + WTRM I N A S KFSSDRTI +YAR+IW + P
Sbjct:  638 GDRFRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEDNFFIFGMRVEDVERLDQRGYNAQEYYD-RIPELRQIIEQLSSGFFSPKQPDLFKDIVNM--VMHHDRFKVFADYEEYIKCQDKVSELYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGLEP 830          
The following BLAST results are available for this feature:
BLAST of CX675019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PHSG_HAEIN1.548e-4145.73Glycogen phosphorylase OS=Haemophilus influenzae G... [more]
PYGM_HUMAN2.640e-4146.50Glycogen phosphorylase, muscle form OS=Homo sapien... [more]
PYGB_HUMAN4.503e-4146.31Glycogen phosphorylase, brain form OS=Homo sapiens... [more]
PYGM_RABIT5.882e-4146.00Glycogen phosphorylase, muscle form OS=Oryctolagus... [more]
PYGM_MACFA5.882e-4146.00Glycogen phosphorylase, muscle form OS=Macaca fasc... [more]
PHSM_ECOLI5.882e-4148.21Maltodextrin phosphorylase OS=Escherichia coli (st... [more]
PYGM_SHEEP7.682e-4146.00Glycogen phosphorylase, muscle form OS=Ovis aries ... [more]
PYGM_BOVIN7.682e-4146.00Glycogen phosphorylase, muscle form OS=Bos taurus ... [more]
PYGB_MOUSE7.682e-4145.59Glycogen phosphorylase, brain form OS=Mus musculus... [more]
PYGM_RAT1.003e-4045.92Glycogen phosphorylase, muscle form OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59B08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59B08-C15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675019 ID=CX675019; Name=CX675019; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTGAAACAAGATTTTCAGTTCTTATTTATTTTATTCTATTAACTAC
GTAATACAGTAATTATATTCATCGAAGATACATTTATTCACGGCTTTCAT
CCAGGGATCATAAGCATTTTGCTTTACATAGAACATATATCAACAGGATG
CCATAAGTGATCAGAAAAGCCTGTGGTAGTCCCAACTCAAGTACTAGGAA
CAAGCATTACACAGTCACGGCAATTCGACGGGTATTATGTTCCATATGTC
TCGGGCATATTCCTGAATCGTTCTGTCGCTGCTGAACTTGGATGAACCCG
CTGTGTTCATGATCGACATTCTCGTCCATCTCTTTTGATCGCAATATGCT
TCATCAACCTTCTCTTGGCATTCCAAGTAACTAGGGAAATCTTTGCCCAC
GAGGAAATAATCTGCCTGGCCAAAACCTTCATTTCCTTCCAGTGATCCCA
TTAGTTCATCATAGTTGTAAGAACCAAAAACACCAGATTTGACAAATTTC
TTCACTTCTTCAAAACGTGCGTCGGGAACAAATTTCCCCTCAGATCTTTC
TTTTCTCAATCCTGCAATCTCGTGGGCTCTGGCACCAAATAGGAAAAAGT
TCTCCTCTCCAACCTCTTGCCGTATTTCAACATTGGCACCATCCAAGGTT
CCAATCAAAATGCAACCATTCATTGCAAATTTCATGTTACTGGTACCACT
AGCCTCCATCCCGGCAGTACTGATGTGTTGTGAGAGCTCACTTGCAGGTA
TAAGCAATTCAGCCACACTTACATTGTAATCAGGGACAAAAATAACCTTC
AATAAGTCACCT
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