CX675019

Overview
NameCX675019
Unique NameCX675019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4331 contig Csv1_Contig4331:16..827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX675019 vs. ExPASy Swiss-Prot
Match: PHSM_STRPN (Maltodextrin phosphorylase OS=Streptococcus pneumoniae GN=malP PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.710e-28
Identity = 73/192 (38.02%), Postives = 110/192 (57.29%), Query Frame = -2 
Query:  236 LKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE---RSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 802
            L+V+ V +YNV+ A  LIPA ++S+ IS A  EASGT NMKF +NG + +GT+DGANVEI + VGEEN ++FG  +  +  L  +   +S   +  +A    V   V   V  + N + L      NE   + D+F+   D   Y++ +E++   Y D+  W    I+N + +  FSSDRTI +Y  DIW++
Sbjct:  563 LQVVMVENYNVTAASFLIPACDISEQISLASKEASGTGNMKFMLNGALTLGTMDGANVEIAELVGEENIYIFGEDSETVIDLYAKAAYKSSEFYAREAIKPLVDFIVSDAVLAAGNKERLERFY--NELINK-DWFMTLLDLEDYIKVKEQMLADYEDRDAWLDKVIVNISKAGFFSSDRTIAQYNEDIWHL 751
The following BLAST results are available for this feature:
BLAST of CX675019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PHSM_STRPN5.710e-2838.02Maltodextrin phosphorylase OS=Streptococcus pneumo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59B08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59B08-C15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675019 ID=CX675019; Name=CX675019; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTGAAACAAGATTTTCAGTTCTTATTTATTTTATTCTATTAACTAC
GTAATACAGTAATTATATTCATCGAAGATACATTTATTCACGGCTTTCAT
CCAGGGATCATAAGCATTTTGCTTTACATAGAACATATATCAACAGGATG
CCATAAGTGATCAGAAAAGCCTGTGGTAGTCCCAACTCAAGTACTAGGAA
CAAGCATTACACAGTCACGGCAATTCGACGGGTATTATGTTCCATATGTC
TCGGGCATATTCCTGAATCGTTCTGTCGCTGCTGAACTTGGATGAACCCG
CTGTGTTCATGATCGACATTCTCGTCCATCTCTTTTGATCGCAATATGCT
TCATCAACCTTCTCTTGGCATTCCAAGTAACTAGGGAAATCTTTGCCCAC
GAGGAAATAATCTGCCTGGCCAAAACCTTCATTTCCTTCCAGTGATCCCA
TTAGTTCATCATAGTTGTAAGAACCAAAAACACCAGATTTGACAAATTTC
TTCACTTCTTCAAAACGTGCGTCGGGAACAAATTTCCCCTCAGATCTTTC
TTTTCTCAATCCTGCAATCTCGTGGGCTCTGGCACCAAATAGGAAAAAGT
TCTCCTCTCCAACCTCTTGCCGTATTTCAACATTGGCACCATCCAAGGTT
CCAATCAAAATGCAACCATTCATTGCAAATTTCATGTTACTGGTACCACT
AGCCTCCATCCCGGCAGTACTGATGTGTTGTGAGAGCTCACTTGCAGGTA
TAAGCAATTCAGCCACACTTACATTGTAATCAGGGACAAAAATAACCTTC
AATAAGTCACCT
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