EY665772

Overview
NameEY665772
Unique NameEY665772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.174e-21
Identity = 73/210 (34.76%), Postives = 105/210 (50.00%), Query Frame = 3
Query:  123 SAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSAS----------FKVEAKGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFA 674
            SAAV    +S   FLTG  G  ++ +   P+++                 AK  W+P       L  P +L+GSLPGD GFDPLGL +DP  LKWY +AEL++ RWAM  V+G+ + + ++ I       W++AG    A    S  TL   + IL  +VE +RW D  +P S + +         + ++    E GYPGG  F+PL  A
Sbjct:    5 SAAVLNGLSSS--FLTG--GNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALA 204          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.037e-20
Identity = 72/212 (33.96%), Postives = 107/212 (50.47%), Query Frame = 3
Query:  108 VTTQASAAVFRPCASKSRFLTG---SSGKLNREVALKPVSSS----ASFKVEAKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFA 674
            +TT ++ AV    +S   FLTG   +   L   V  +  +      A+  V  K  W+P + S      P +L+GSLPGD GFDPLGL +DP  LKWY +AEL++ RWAM  V+G+ + + ++ I       W++AG    A    S  +L   + +L  +VE +RW D  +  S + D         + ++    E GYPGG  F+PL  A
Sbjct:    1 MTTTSATAVLNGLSSS--FLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALA 204          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.607e-16
Identity = 56/184 (30.43%), Postives = 79/184 (42.93%), Query Frame = 3
Query:  174 SSGKLNREVALKPVSSSASFKVEAKGEWLPGL---ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSSTLFVIEFILFHYVE------IRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            ++GK     A  P SS   F    + +WL      A+P YL G  PGD G+D  GL+ DPE  K Y + EL+++RWAMLG +G   PE+  K G       W+ AG         +Y  + S +     +    V+      I  ++    P     DP+            YPG  F+PL  A
Sbjct:   17 ATGKKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPL------------YPGESFDPLGLA 188          

HSP 2 Score: 26.9498 bits (58), Expect = 2.607e-16
Identity = 15/36 (41.67%), Postives = 20/36 (55.56%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LA  + FG +  A     KG  +NL
Sbjct:  196 ELKVKEIKNGRLASFSMFGFFVQA-IVTGKGPVQNL 230          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.384e-16
Identity = 63/204 (30.88%), Postives = 98/204 (48.04%), Query Frame = 3
Query:   99 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            MA  T   S+  F   A K    +  +TG+     R+   KPV+SS+ +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A
Sbjct:    1 MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLA 200          

HSP 2 Score: 30.8018 bits (68), Expect = 3.384e-16
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  208 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 242          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.715e-16
Identity = 64/209 (30.62%), Postives = 99/209 (47.37%), Query Frame = 3
Query:   99 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFA 674
            MAT T   S++ F   A K    S  +TG+     R+ A K  P SS + +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A
Sbjct:    1 MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLA 202          

HSP 2 Score: 30.8018 bits (68), Expect = 5.715e-16
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  210 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 244          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.428e-16
Identity = 65/206 (31.55%), Postives = 99/206 (48.06%), Query Frame = 3
Query:   99 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVA--LKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            MA  T   S++ F   A K    S  +TG+     R+ A   KPVSSS+ +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+  G ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A
Sbjct:    1 MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGG-SQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGEPLGEVVDPLYPGGSFDPLGLA 202          

HSP 2 Score: 30.8018 bits (68), Expect = 7.428e-16
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  210 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 244          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.428e-16
Identity = 66/209 (31.58%), Postives = 102/209 (48.80%), Query Frame = 3
Query:   99 MATVTTQASAAVFRPCASKSRFLTGSSGKL--NREVAL-------KPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            MA  TT  S+    P A K+  L+ SS ++  N +V +       KPVSS + +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A
Sbjct:    1 MAASTTALSS----PFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGEPLGEVVDPLYPGGSFDPLGLA 201          

HSP 2 Score: 31.187 bits (69), Expect = 7.428e-16
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  209 ELKVKEIKNGRLAMFSMFGFFVQA-LVTGKGPLENL 243          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.658e-16
Identity = 63/214 (29.44%), Postives = 95/214 (44.39%), Query Frame = 3
Query:   99 MATVTTQASAAVF-RPCASKSRFLTGSSGKLNREVALKP---VSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            MA  T   S+ V  R   S S  L G +    R+ A KP    SS + +    +  +L  L+   P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S         ++ ++ +L   VE   ++    P     DP+            YPGG F+PL  A
Sbjct:    1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVE--GYRIAGGPLGEVVDPL------------YPGGAFDPLGLA 200          

HSP 2 Score: 30.8018 bits (68), Expect = 9.658e-16
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  208 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 242          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.255e-15
Identity = 65/206 (31.55%), Postives = 98/206 (47.57%), Query Frame = 3
Query:   99 MATVTTQASAAVFRPCA----SKSRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEV---GYPGGIFNPLNFA 674
            MA  T   S++ F   A    S S  +TG+     R+   K  P SSS+ +    + ++L   +  +P+YL G  P D G+D  GL+ DPE      + E+++ RWAMLG +G + PE+F + GI      W+ AG A+ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A
Sbjct:    1 MAATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVIDPLYPGGSFDPLGLA 202          

HSP 2 Score: 30.8018 bits (68), Expect = 1.255e-15
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  210 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 244          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.255e-15
Identity = 66/209 (31.58%), Postives = 102/209 (48.80%), Query Frame = 3
Query:   99 MATVTTQASAAVFRPCASKSRFLTGSSGKL--NREVAL-------KPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            MA  TT  S+    P A K+  L+ SS ++  N +V +       KPVSS + +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A
Sbjct:    1 MAASTTALSS----PFAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLA 201          

HSP 2 Score: 30.8018 bits (68), Expect = 1.255e-15
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  209 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 243          
The following BLAST results are available for this feature:
BLAST of EY665772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB4A_SOLLC8.174e-2134.76Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC9.037e-2033.96Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB2_CHLRE2.607e-1630.43Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_TOBAC3.384e-1630.88Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2G_SOLLC5.715e-1630.62Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB23_NICPL7.428e-1631.55Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB25_NICPL7.428e-1631.58Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_ORYSJ9.658e-1629.44Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_PETSP1.255e-1531.55Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_TOBAC1.255e-1531.58Chlorophyll a-b binding protein 16, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-D07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665772 ID=EY665772; Name=EY665772; organism=Citrus sinensis; type=EST; length=922bp
AAGCTGCAGTACGGTCGGAATTCCGGGTCGACCACGCGTCCGCCTTCTTC
CCCACCACCACTCCTGCACTACGAGGCTCATAACTCTCGTCGGGAAACAT
GGCAACCGTCACAACACAAGCCTCGGCCGCTGTGTTCCGGCCATGCGCAT
CCAAATCCAGGTTCCTTACTGGGTCTTCGGGTAAATTAAATAGGGAAGTG
GCCTTGAAACCAGTGAGCTCAAGCGCTTCTTTCAAAGTTGAAGCCAAGGG
GGAGTGGTTACCGGGCTTGGCCTCGCCAACTTACCTCAACGGCAGCCTCC
CCGGTGACAATGGATTTGACCCCTTGGGGCTTGCCGAGGATCCTGAGAAC
TTGAAGTGGTATGTGCAAGCCGAGCTTGTGAATTCGCGCTGGGCCATGTT
GGGTGTTGTTGGAATGTTGTTGCCCGAAGTTTTCACAAAGATTGGAATTA
TTAATGTTCCTCAATGGTATGATGCTGGGAAGGCTGAGTACTTTGCATCA
TCATCGACCCTTTTCGTGATCGAGTTCATCTTGTTCCACTATGTGGAGAT
AAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTCAACCAAGACCCCA
TTTTCAAGCAGTACAGCTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGC
ATCTTCAACCCACTCAACTTTGCACCCCACTGATGAAGCAAAGGAGAAGG
AGCTTGCCAATGGGAAATTGGCAATGTTGGCATTCTTTGGGATTTATTGG
TCAGCACAATGGGACCAGGCAAAGGGCCAATTTGAAAACCTCCTGCAAAC
ATAATCTCTGAACCCATGGGAACAAAACCATTCGTCCAAAACCTTAAAGG
GGAAATTAATCCAAAAATGGAATTGGCAAATTCCGGGAACCCTGTTTTTT
TTTCTTTTTGTAACACATGAAA
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