EY665772 | Citrus Genome Database

Overview


Name	EY665772
Unique Name	EY665772
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	922

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.631e-15
Identity = 63/216 (29.17%), Postives = 97/216 (44.91%), Query Frame = 3

Query:   99 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            MA  T   S++ F     K    S  +TG+     R+ A K  PVSS + +    + ++L   +  +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+F + G+      W  AG         +Y  + S         ++  + +L   VE   ++    P  V  DP+            YPGG F+PL  A
Sbjct:    1 MAAATMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVE--GYRVAGGPLGVVVDPL------------YPGGSFDPLGLA 202

HSP 2 Score: 29.6462 bits (65), Expect = 1.631e-15
Identity = 17/36 (47.22%), Postives = 20/36 (55.56%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE  NG+LAM + FG +  A     KG  ENL
Sbjct:  210 ELKVKETKNGRLAMFSMFGFFIQA-IVTGKGPLENL 244

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.631e-15
Identity = 63/205 (30.73%), Postives = 98/205 (47.80%), Query Frame = 3

Query:   99 MATVTTQASAAVFRPCA---SKSRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEV---GYPGGIFNPLNFA 674
            MA  T   S++ F   A     S  +TG+     R+   K  PVSS + +    + ++L   +  +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+F + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A
Sbjct:    1 MAAATMAISSSSFAGKAVNVPSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVIDPLYPGGSFDPLGLA 201

HSP 2 Score: 30.8018 bits (68), Expect = 1.631e-15
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  209 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 243

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.123e-15
Identity = 55/178 (30.90%), Postives = 89/178 (50.00%), Query Frame = 3

Query:  165 LTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            + G++    R+ A K VSS + +    + ++L   +   P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A
Sbjct:   17 IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLA 190

HSP 2 Score: 31.5722 bits (70), Expect = 2.123e-15
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KEL NG+LAM + FG +  A     KG  ENL
Sbjct:  198 ELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPLENL 232

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.580e-15
Identity = 41/142 (28.87%), Postives = 67/142 (47.18%), Query Frame = 3

Query:  273 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S +     +     ++     ++        P+ +       ++ YPGG F+PL  A
Sbjct:   66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE-----AEDLLYPGGSFDPLGLA 202

HSP 2 Score: 31.5722 bits (70), Expect = 3.580e-15
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KEL NG+LAM + FG +  A     KG  ENL
Sbjct:  210 ELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPIENL 244

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.580e-15
Identity = 41/142 (28.87%), Postives = 67/142 (47.18%), Query Frame = 3

Query:  273 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S +     +     ++     ++        P+ +       ++ YPGG F+PL  A
Sbjct:   66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE-----AEDLLYPGGSFDPLGLA 202

HSP 2 Score: 31.5722 bits (70), Expect = 3.580e-15
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KEL NG+LAM + FG +  A     KG  ENL
Sbjct:  210 ELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPIENL 244

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.652e-15
Identity = 57/187 (30.48%), Postives = 90/187 (48.13%), Query Frame = 3

Query:  156 SRFLTGSSGKLNREVALKPVSSSAS-----FKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFA 674
            S+ L G+   + +    K V+SS S      +V+  G +     SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A
Sbjct:   26 SQELGGARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSG--ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLA 203

HSP 2 Score: 31.5722 bits (70), Expect = 4.652e-15
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KEL NG+LAM + FG +  A     KG  ENL
Sbjct:  211 ELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPLENL 245

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.654e-15
Identity = 48/149 (32.21%), Postives = 70/149 (46.98%), Query Frame = 3

Query:  276 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            P+YL+G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  K G+      W+ AG         +Y  + S         ++  + IL   VE   ++    P    +DPI            YPGG F+PL  A
Sbjct:   66 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVE--GYRVAGGPLGEVEDPI------------YPGGSFDPLGLA 200

HSP 2 Score: 31.5722 bits (70), Expect = 4.654e-15
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KEL NG+LAM + FG +  A     KG  ENL
Sbjct:  208 ELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPIENL 242

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.654e-15
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = 3

Query:  273 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFA----------------SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            +P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ +K G+      W+ AG A+ F+                S   ++ ++ +L  +VE  R         V   P+ +       +  YPGG F+PL  A
Sbjct:   63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLGEGL-----DKVYPGGAFDPLGLA 198

HSP 2 Score: 31.5722 bits (70), Expect = 4.654e-15
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KEL NG+LAM + FG +  A     KG  ENL
Sbjct:  206 ELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPIENL 240

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.654e-15
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = 3

Query:  273 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFA----------------SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            +P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ +K G+      W+ AG A+ F+                S   ++ ++ +L  +VE  R         V   P+ +       +  YPGG F+PL  A
Sbjct:   63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLGEGL-----DKVYPGGAFDPLGLA 198

HSP 2 Score: 31.5722 bits (70), Expect = 4.654e-15
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KEL NG+LAM + FG +  A     KG  ENL
Sbjct:  206 ELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPIENL 240

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.665e-15
Identity = 54/179 (30.17%), Postives = 82/179 (45.81%), Query Frame = 3

Query:  192 REVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            R+ A K VSS + +    + ++L   +   P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S         ++  + IL   VE   ++    P     DPI            YPGG F+PL  A
Sbjct:   16 RKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLALA 180

HSP 2 Score: 30.8018 bits (68), Expect = 4.665e-15
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  188 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 222

The following BLAST results are available for this feature:

BLAST of EY665772 vs. ExPASy Swiss-Prot

BLAST of EY665772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63


Match Name	E-value	Identity	Description
CB22_PETSP	1.631e-15	29.17	Chlorophyll a-b binding protein 22L, chloroplastic...	[more]
CB24_PETSP	1.631e-15	30.73	Chlorophyll a-b binding protein 25, chloroplastic ...	[more]
CB21_CUCSA	2.123e-15	30.90	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB22_ARATH	3.580e-15	28.87	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_ARATH	3.580e-15	28.87	Chlorophyll a-b binding protein 165/180, chloropla...	[more]
CB28_PEA	4.652e-15	30.48	Chlorophyll a-b binding protein 8, chloroplastic O...	[more]
CB23_POLMU	4.654e-15	32.21	Chlorophyll a-b binding protein type 1 member F3, ...	[more]
CB23_ORYSJ	4.654e-15	31.13	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_ORYSI	4.654e-15	31.13	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB21_SOYBN	4.665e-15	30.17	Chlorophyll a-b binding protein, chloroplastic (Fr...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C1-102-095-D07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY665772 ID=EY665772; Name=EY665772; organism=Citrus sinensis; type=EST; length=922bp
AAGCTGCAGTACGGTCGGAATTCCGGGTCGACCACGCGTCCGCCTTCTTC
CCCACCACCACTCCTGCACTACGAGGCTCATAACTCTCGTCGGGAAACAT
GGCAACCGTCACAACACAAGCCTCGGCCGCTGTGTTCCGGCCATGCGCAT
CCAAATCCAGGTTCCTTACTGGGTCTTCGGGTAAATTAAATAGGGAAGTG
GCCTTGAAACCAGTGAGCTCAAGCGCTTCTTTCAAAGTTGAAGCCAAGGG
GGAGTGGTTACCGGGCTTGGCCTCGCCAACTTACCTCAACGGCAGCCTCC
CCGGTGACAATGGATTTGACCCCTTGGGGCTTGCCGAGGATCCTGAGAAC
TTGAAGTGGTATGTGCAAGCCGAGCTTGTGAATTCGCGCTGGGCCATGTT
GGGTGTTGTTGGAATGTTGTTGCCCGAAGTTTTCACAAAGATTGGAATTA
TTAATGTTCCTCAATGGTATGATGCTGGGAAGGCTGAGTACTTTGCATCA
TCATCGACCCTTTTCGTGATCGAGTTCATCTTGTTCCACTATGTGGAGAT
AAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTCAACCAAGACCCCA
TTTTCAAGCAGTACAGCTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGC
ATCTTCAACCCACTCAACTTTGCACCCCACTGATGAAGCAAAGGAGAAGG
AGCTTGCCAATGGGAAATTGGCAATGTTGGCATTCTTTGGGATTTATTGG
TCAGCACAATGGGACCAGGCAAAGGGCCAATTTGAAAACCTCCTGCAAAC
ATAATCTCTGAACCCATGGGAACAAAACCATTCGTCCAAAACCTTAAAGG
GGAAATTAATCCAAAAATGGAATTGGCAAATTCCGGGAACCCTGTTTTTT
TTTCTTTTTGTAACACATGAAA