EY665772

Overview
NameEY665772
Unique NameEY665772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.043e-15
Identity = 49/140 (35.00%), Postives = 71/140 (50.71%), Query Frame = 3
Query:  273 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            +P+YLNG   GD G+D  GL+ DPE      + E++++RWAMLG +G L PE+  K G+      W+ AG A+ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A
Sbjct:   68 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVTDPIYPGGSFDPLGLA 203          

HSP 2 Score: 30.8018 bits (68), Expect = 6.043e-15
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  211 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 245          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.048e-15
Identity = 47/142 (33.10%), Postives = 70/142 (49.30%), Query Frame = 3
Query:  273 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFA 674
            +P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ +K G+      W+ AG A+ F+     ++    L H   I   W        V    + + Y +    +G      YPGG F+PL  A
Sbjct:   64 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAT-----QVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLA 199          

HSP 2 Score: 30.8018 bits (68), Expect = 6.048e-15
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  207 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPIENL 241          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.048e-15
Identity = 53/179 (29.61%), Postives = 82/179 (45.81%), Query Frame = 3
Query:  192 REVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            R+   K VSS + +    + ++L   +   P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+      W+ AG         +Y  + S         ++  + IL   VE   ++    P     DPI            YPGG F+PL  A
Sbjct:   34 RKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLGLA 198          

HSP 2 Score: 31.5722 bits (70), Expect = 6.048e-15
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KEL NG+LAM + FG +  A     KG  ENL
Sbjct:  206 ELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPLENL 240          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.853e-15
Identity = 47/143 (32.87%), Postives = 72/143 (50.35%), Query Frame = 3
Query:  273 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFA 674
            SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A
Sbjct:   69 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLA 204          

HSP 2 Score: 31.5722 bits (70), Expect = 7.853e-15
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KEL NG+LAM + FG +  A     KG  ENL
Sbjct:  212 ELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPLENL 246          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.862e-15
Identity = 63/230 (27.39%), Postives = 98/230 (42.61%), Query Frame = 3
Query:   36 ASAFFPTTTPALRGS*LSSG-NMATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            A+A    ++PAL G   +       +T + SAA  +P AS S +        +R + L P+S                   P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S         ++ ++ +L   VE   ++    P     DP+            YPGG F+PL  A
Sbjct:    2 AAATMALSSPALAGKAAAKVFGEGRITMRKSAAKPKPAASGSPWYGA-----DRVLYLGPLSGEP----------------PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVE--GYRIAGGPLGEVVDPL------------YPGGSFDPLGLA 196          

HSP 2 Score: 30.8018 bits (68), Expect = 7.862e-15
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  204 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 238          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.022e-14
Identity = 49/162 (30.25%), Postives = 75/162 (46.30%), Query Frame = 3
Query:  246 KGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF-TKIGI-INVPQWYDAGK-------AEYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            + +WL   ++  P YL G  PGD G+D  GL+ DPE  K Y + E++++RWA+LG +G+L PE+  T  G+    P W+ AG         +Y  S + +          ++ +L   +E  R      P     DP+            YPG  F+PL  A
Sbjct:   44 RAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNG--GPAGEGLDPL------------YPGESFDPLGLA 191          

HSP 2 Score: 28.8758 bits (63), Expect = 1.022e-14
Identity = 16/36 (44.44%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  +NL
Sbjct:  199 ELKVKEIKNGRLAMFSCFGFFVQA-IVTGKGPIQNL 233          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.326e-14
Identity = 63/206 (30.58%), Postives = 98/206 (47.57%), Query Frame = 3
Query:   99 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            MA  T   S++ F   A K    S  +TG+     R+   K  P+SS + +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A
Sbjct:    1 MAAATMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLA 202          

HSP 2 Score: 28.8758 bits (63), Expect = 1.326e-14
Identity = 16/36 (44.44%), Postives = 20/36 (55.56%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K K + NG+LAM + FG +  A     KG  ENL
Sbjct:  210 ELKVKHIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 244          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.326e-14
Identity = 54/180 (30.00%), Postives = 89/180 (49.44%), Query Frame = 3
Query:  165 LTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            +TG+   + R+   K  PVSS + +    + ++L   +  +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G++     ++    P  EV    YPGG F+PL  A
Sbjct:   27 ITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEG---YRVAGGPLGEVTDPLYPGGSFDPLGLA 202          

HSP 2 Score: 30.0314 bits (66), Expect = 1.326e-14
Identity = 16/37 (43.24%), Postives = 22/37 (59.46%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENLL 795
            E K KE+ NG+LAM + FG +  A     KG  +NL+
Sbjct:  210 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLDNLV 245          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.326e-14
Identity = 64/206 (31.07%), Postives = 97/206 (47.09%), Query Frame = 3
Query:   99 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVA--LKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            MA  T   S+  F   A K    S  +TG+     R+ A   K VSS + +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A
Sbjct:    1 MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLA 202          

HSP 2 Score: 30.8018 bits (68), Expect = 1.326e-14
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  210 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 244          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.327e-14
Identity = 59/197 (29.95%), Postives = 89/197 (45.18%), Query Frame = 3
Query:  102 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            A VT + +AA  +P AS      G     +R + L P+S                   P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G++     ++    P  EV    YPGG F+PL  A
Sbjct:   28 ARVTMRKTAAKAKPAASSGSPWYGP----DRVLYLGPLSGEP----------------PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEG---YRVAGGPLGEVVDPLYPGGTFDPLGLA 200          

HSP 2 Score: 30.8018 bits (68), Expect = 1.327e-14
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            + K KEL NG+LAM + FG +  A     KG  ENL
Sbjct:  208 DVKVKELKNGRLAMFSMFGFFVQA-IVTGKGPLENL 242          
The following BLAST results are available for this feature:
BLAST of EY665772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB2_PHYPA6.043e-1535.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_LEMGI6.048e-1533.10Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOYBN6.048e-1529.61Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_PEA7.853e-1532.87Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_ORYSJ7.862e-1527.39Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_CHLMO1.022e-1430.25Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_TOBAC1.326e-1430.58Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB27_TOBAC1.326e-1430.00Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_TOBAC1.326e-1431.07Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB29_MAIZE1.327e-1429.95Chlorophyll a-b binding protein M9, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-D07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665772 ID=EY665772; Name=EY665772; organism=Citrus sinensis; type=EST; length=922bp
AAGCTGCAGTACGGTCGGAATTCCGGGTCGACCACGCGTCCGCCTTCTTC
CCCACCACCACTCCTGCACTACGAGGCTCATAACTCTCGTCGGGAAACAT
GGCAACCGTCACAACACAAGCCTCGGCCGCTGTGTTCCGGCCATGCGCAT
CCAAATCCAGGTTCCTTACTGGGTCTTCGGGTAAATTAAATAGGGAAGTG
GCCTTGAAACCAGTGAGCTCAAGCGCTTCTTTCAAAGTTGAAGCCAAGGG
GGAGTGGTTACCGGGCTTGGCCTCGCCAACTTACCTCAACGGCAGCCTCC
CCGGTGACAATGGATTTGACCCCTTGGGGCTTGCCGAGGATCCTGAGAAC
TTGAAGTGGTATGTGCAAGCCGAGCTTGTGAATTCGCGCTGGGCCATGTT
GGGTGTTGTTGGAATGTTGTTGCCCGAAGTTTTCACAAAGATTGGAATTA
TTAATGTTCCTCAATGGTATGATGCTGGGAAGGCTGAGTACTTTGCATCA
TCATCGACCCTTTTCGTGATCGAGTTCATCTTGTTCCACTATGTGGAGAT
AAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTCAACCAAGACCCCA
TTTTCAAGCAGTACAGCTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGC
ATCTTCAACCCACTCAACTTTGCACCCCACTGATGAAGCAAAGGAGAAGG
AGCTTGCCAATGGGAAATTGGCAATGTTGGCATTCTTTGGGATTTATTGG
TCAGCACAATGGGACCAGGCAAAGGGCCAATTTGAAAACCTCCTGCAAAC
ATAATCTCTGAACCCATGGGAACAAAACCATTCGTCCAAAACCTTAAAGG
GGAAATTAATCCAAAAATGGAATTGGCAAATTCCGGGAACCCTGTTTTTT
TTTCTTTTTGTAACACATGAAA
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