EY665772 | Citrus Genome Database

Overview


Name	EY665772
Unique Name	EY665772
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	922

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.334e-14
Identity = 47/143 (32.87%), Postives = 72/143 (50.35%), Query Frame = 3

Query:  273 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFA 674
            SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A
Sbjct:   28 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLA 163

HSP 2 Score: 31.187 bits (69), Expect = 1.334e-14
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KEL NG+LAM + FG +  A     KG  ENL
Sbjct:  171 ELKVKELKNGRLAMFSMFGFFVPA-IVTGKGPLENL 205

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.722e-14
Identity = 48/139 (34.53%), Postives = 70/139 (50.36%), Query Frame = 3

Query:  276 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            P+YL G  PGD G+D  GL+ DPEN     + E+++ RWAMLG +G + PE+  + G+      W+ AG A+ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A
Sbjct:   75 PSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLA 209

HSP 2 Score: 30.8018 bits (68), Expect = 1.722e-14
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  217 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPIENL 251

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.724e-14
Identity = 46/149 (30.87%), Postives = 68/149 (45.64%), Query Frame = 3

Query:  276 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+ +K G+      W+ AG         +Y  + +         ++  + +L  +VE  R      P     DPI            YPGG F+PL  A
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLGEGLDPI------------YPGGAFDPLGLA 200

HSP 2 Score: 30.8018 bits (68), Expect = 1.724e-14
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  208 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPIENL 242

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.724e-14
Identity = 57/195 (29.23%), Postives = 87/195 (44.62%), Query Frame = 3

Query:  147 ASKSRFLTGSSGKLNREVALKPVSSSASF---KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            A  S  L G+     R+    PVS S  +   +V+  G +     +P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S        +++  + IL   VE   ++    P     DP+            YPGG F+PL  A
Sbjct:   21 APSSSELFGNGRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSG--EAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVE--GYRVAGGPLGEIVDPL------------YPGGSFDPLGLA 199

HSP 2 Score: 31.5722 bits (70), Expect = 1.724e-14
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KEL NG+LAM + FG +  A     KG  ENL
Sbjct:  207 ELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPLENL 241

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.725e-14
Identity = 46/142 (32.39%), Postives = 71/142 (50.00%), Query Frame = 3

Query:  276 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFA 674
            P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A
Sbjct:   63 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLA 197

HSP 2 Score: 31.5722 bits (70), Expect = 1.725e-14
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KEL NG+LAM + FG +  A     KG  ENL
Sbjct:  205 ELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPLENL 239

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.240e-14
Identity = 45/142 (31.69%), Postives = 69/142 (48.59%), Query Frame = 3

Query:  273 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFA 674
            +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+ +K G+      W+ AG ++ F+     ++    L H   I   W        V    + + Y +    +G      YPGG F+PL  A
Sbjct:   65 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAVW-----ASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLA 200

HSP 2 Score: 30.8018 bits (68), Expect = 2.240e-14
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  208 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPIENL 242

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.905e-14
Identity = 47/139 (33.81%), Postives = 70/139 (50.36%), Query Frame = 3

Query:  276 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG A+ F+     ++    L H   I   W   +   G++     ++    P  EV    YPGG F+PL  A
Sbjct:   79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG---YRVAGGPLGEVTDPIYPGGNFDPLGLA 213

HSP 2 Score: 30.8018 bits (68), Expect = 2.905e-14
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  221 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPIENL 255

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.911e-14
Identity = 56/194 (28.87%), Postives = 91/194 (46.91%), Query Frame = 3

Query:  126 AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFA 674
            A    P AS+   ++G+     R+   K   SS+ +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A
Sbjct:   17 AVKLSPSASE---ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLA 200

HSP 2 Score: 30.8018 bits (68), Expect = 2.911e-14
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  208 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 242

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.781e-14
Identity = 62/224 (27.68%), Postives = 95/224 (42.41%), Query Frame = 3

Query:   36 ASAFFPTTTPALRGS*LSSGNMATVTTQASAAVFRPCASKSRFLTGSSGKL--NREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFA 674
            AS+    ++P+L G  +  G  A+          R  A K + +  SS     +R   L P S                  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A
Sbjct:    2 ASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGE----------------SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLA 202

HSP 2 Score: 30.8018 bits (68), Expect = 3.781e-14
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  210 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 244

[Close]

BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.781e-14
Identity = 58/193 (30.05%), Postives = 93/193 (48.19%), Query Frame = 3

Query:  126 AAVFRPCASKSRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            A  F P +S+   +TG+     R+   K  PVSS + +    + ++L   +  +P+YL G  PGD G+D   L+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A
Sbjct:   17 AVKFSPSSSE---ITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLA 202

HSP 2 Score: 30.8018 bits (68), Expect = 3.781e-14
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1

Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  210 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 244

The following BLAST results are available for this feature:

BLAST of EY665772 vs. ExPASy Swiss-Prot

BLAST of EY665772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63


Match Name	E-value	Identity	Description
CB21_PEA	1.334e-14	32.87	Chlorophyll a-b binding protein AB96 (Fragment) OS...	[more]
CB2B_PINSY	1.722e-14	34.53	Chlorophyll a-b binding protein type 2 member 1B, ...	[more]
CB21_GOSHI	1.724e-14	30.87	Chlorophyll a-b binding protein 151, chloroplastic...	[more]
CB23_APIGR	1.724e-14	29.23	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB21_MAIZE	1.725e-14	32.39	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB23_TOBAC	2.240e-14	31.69	Chlorophyll a-b binding protein 36, chloroplastic ...	[more]
CB2A_PINSY	2.905e-14	33.81	Chlorophyll a-b binding protein type 2 member 1A, ...	[more]
CB2B_SOLLC	2.911e-14	28.87	Chlorophyll a-b binding protein 1B, chloroplastic ...	[more]
CB2A_SPIOL	3.781e-14	27.68	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB25_PETSP	3.781e-14	30.05	Chlorophyll a-b binding protein 91R, chloroplastic...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-102-095-D07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY665772 ID=EY665772; Name=EY665772; organism=Citrus sinensis; type=EST; length=922bp
AAGCTGCAGTACGGTCGGAATTCCGGGTCGACCACGCGTCCGCCTTCTTC
CCCACCACCACTCCTGCACTACGAGGCTCATAACTCTCGTCGGGAAACAT
GGCAACCGTCACAACACAAGCCTCGGCCGCTGTGTTCCGGCCATGCGCAT
CCAAATCCAGGTTCCTTACTGGGTCTTCGGGTAAATTAAATAGGGAAGTG
GCCTTGAAACCAGTGAGCTCAAGCGCTTCTTTCAAAGTTGAAGCCAAGGG
GGAGTGGTTACCGGGCTTGGCCTCGCCAACTTACCTCAACGGCAGCCTCC
CCGGTGACAATGGATTTGACCCCTTGGGGCTTGCCGAGGATCCTGAGAAC
TTGAAGTGGTATGTGCAAGCCGAGCTTGTGAATTCGCGCTGGGCCATGTT
GGGTGTTGTTGGAATGTTGTTGCCCGAAGTTTTCACAAAGATTGGAATTA
TTAATGTTCCTCAATGGTATGATGCTGGGAAGGCTGAGTACTTTGCATCA
TCATCGACCCTTTTCGTGATCGAGTTCATCTTGTTCCACTATGTGGAGAT
AAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTCAACCAAGACCCCA
TTTTCAAGCAGTACAGCTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGC
ATCTTCAACCCACTCAACTTTGCACCCCACTGATGAAGCAAAGGAGAAGG
AGCTTGCCAATGGGAAATTGGCAATGTTGGCATTCTTTGGGATTTATTGG
TCAGCACAATGGGACCAGGCAAAGGGCCAATTTGAAAACCTCCTGCAAAC
ATAATCTCTGAACCCATGGGAACAAAACCATTCGTCCAAAACCTTAAAGG
GGAAATTAATCCAAAAATGGAATTGGCAAATTCCGGGAACCCTGTTTTTT
TTTCTTTTTGTAACACATGAAA