EY665772

Overview
NameEY665772
Unique NameEY665772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.781e-14
Identity = 39/141 (27.66%), Postives = 66/141 (46.81%), Query Frame = 3
Query:  276 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG         +Y  + S +     +     ++     ++      + P+ +       ++ YPGG F+PL  A
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGE-----AEDLLYPGGSFDPLGLA 201          

HSP 2 Score: 30.8018 bits (68), Expect = 3.781e-14
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  209 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 243          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.782e-14
Identity = 48/150 (32.00%), Postives = 68/150 (45.33%), Query Frame = 3
Query:  276 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFA----------------SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G   PE+  K G+      W+ AG ++ FA                S   ++  + +L  +VE  R      P     DP+            YPGG F+PL  A
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAG-SQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGG--GPLGEGLDPL------------YPGGAFDPLGLA 200          

HSP 2 Score: 30.4166 bits (67), Expect = 3.782e-14
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KEL NG+LAM + FG +  A     KG  +NL
Sbjct:  208 ELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPIQNL 242          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.905e-14
Identity = 47/139 (33.81%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  276 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG A+ F+     ++    L H   I   W   +   G++     ++    P  EV    YPGG F+PL  A
Sbjct:   79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG---YRVAGGPLGEVTDPIYPGGNFDPLGLA 213          

HSP 2 Score: 30.0314 bits (66), Expect = 4.905e-14
Identity = 16/36 (44.44%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            + K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  221 DVKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPIENL 255          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.382e-14
Identity = 63/208 (30.29%), Postives = 97/208 (46.63%), Query Frame = 3
Query:   99 MATVTTQASAAVFRPCASK---SRFLTGSSGKLNREVALKP--VSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFA 674
            MA  T   S++ F   A K   S  L G +    R+ A K   VSSS+ +    +  +L  L+   P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   +   W   +   G+V      + Y +    +G      YPGG F+PL  A
Sbjct:    1 MAATTMSLSSSSFAGKAVKNLPSSALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAG-SQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAV------EGYRIAGGPLGEIVDPLYPGGSFDPLGLA 201          

HSP 2 Score: 28.8758 bits (63), Expect = 6.382e-14
Identity = 16/36 (44.44%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  E+L
Sbjct:  209 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLEDL 243          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.384e-14
Identity = 59/205 (28.78%), Postives = 90/205 (43.90%), Query Frame = 3
Query:   87 SSGNMATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFA 674
            SS   A VT + +AA  +P A+      G     +R + L P+S                   P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A
Sbjct:   23 SSFGEARVTMRKTAAKAKPAAASGSPWYGP----DRVLYLGPLSGEP----------------PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLA 200          

HSP 2 Score: 30.8018 bits (68), Expect = 6.384e-14
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KEL  G+LAML+ FG +  A     KG  ENL
Sbjct:  208 ELKVKELKKGRLAMLSMFGFFVQA-IVTGKGPLENL 242          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.294e-14
Identity = 46/140 (32.86%), Postives = 69/140 (49.29%), Query Frame = 3
Query:  273 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+  G ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A
Sbjct:   64 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKG-SQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLA 199          

HSP 2 Score: 30.8018 bits (68), Expect = 8.294e-14
Identity = 17/36 (47.22%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  207 ELKVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 241          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.375e-14
Identity = 46/139 (33.09%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  276 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            P+YL G  PGD G+D  GL+ DPE      + E+++S WAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A
Sbjct:    7 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLA 141          

HSP 2 Score: 31.5722 bits (70), Expect = 8.375e-14
Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KEL NG+LAM + FG +  A     KG  ENL
Sbjct:  149 ELKVKELKNGRLAMFSMFGFFVQA-IVTGKGPLENL 183          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.402e-13
Identity = 47/148 (31.76%), Postives = 71/148 (47.97%), Query Frame = 3
Query:  273 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINV--PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK------------NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            +P YL G  PGD G+D  GL+ DP+    Y + EL+++RWA+LG +G+L PE+ ++   +    P W+ AG A+ FA     ++    L H   I     ++            N GS        +  L   +  YPGG F+PL  A
Sbjct:   50 TPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAG-AQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGS--------EGFLDDLDTLYPGGPFDPLGLA 188          

HSP 2 Score: 26.1794 bits (56), Expect = 1.402e-13
Identity = 15/36 (41.67%), Postives = 20/36 (55.56%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E K KE+ NG+LAM +  G +  A     KG  +NL
Sbjct:  196 ELKVKEIKNGRLAMFSCLGFFVQA-IVTGKGPVQNL 230          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.984e-13
Identity = 51/164 (31.10%), Postives = 80/164 (48.78%), Query Frame = 3
Query:  207 KPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFA 674
            KPVSS + +    + ++L   +  +P+YL G  PGD G+D  GL+ DP       + E+++ RW MLG +G + PE+F + G+      W+ AG ++ F      ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A
Sbjct:   42 KPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAG-SQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVIDPLYPGGSFDPLGLA 201          

HSP 2 Score: 29.261 bits (64), Expect = 3.984e-13
Identity = 16/36 (44.44%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENL 792
            E + KE+ NG+LAM + FG +  A     KG  ENL
Sbjct:  209 ELEVKEIKNGRLAMFSMFGFFVQA-IVTGKGPLENL 243          
BLAST of EY665772 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.185e-12
Identity = 55/191 (28.80%), Postives = 80/191 (41.88%), Query Frame = 3
Query:  171 GSSGKLNREVALKPVSSSAS-----FKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK---IGIINVPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFA 674
            G +GK  ++ A K VS S+S     +  +A   W      P    G  PGD G+D  GL+ DPE  K Y + EL+++R  +LG +GM+ PE+      I   +   W+ AG A        Y  + S +          ++ +L   VE  R      P     DP+            YPG  F+PL  A
Sbjct:   34 GRAGKSTKKGA-KAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNG--GPAGEGLDPL------------YPGEAFDPLGLA 209          

HSP 2 Score: 30.0314 bits (66), Expect = 4.185e-12
Identity = 21/48 (43.75%), Postives = 24/48 (50.00%), Query Frame = 1
Query:  685 EAKEKELANGKLAMLAFFGIYWSAQWDQAKGQFENLLQT*SLNPWEQN 828
            E K KE+ NG+LAM A  G +  A     KG  ENL      NP E N
Sbjct:  217 ELKVKEIKNGRLAMFACLGFFVQA-IVTGKGPIENLTDH-LANPAENN 262          
The following BLAST results are available for this feature:
BLAST of EY665772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB21_SINAL3.781e-1427.66Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB215_PEA3.782e-1432.00Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2A_PYRPY4.905e-1433.81Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_WHEAT6.382e-1430.29Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_MAIZE6.384e-1428.78Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_HORVU8.294e-1432.86Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_CUCSA8.375e-1433.09Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_DUNTE1.402e-1331.76Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PETSP3.984e-1331.10Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_DUNSA4.185e-1228.80Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-D07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665772 ID=EY665772; Name=EY665772; organism=Citrus sinensis; type=EST; length=922bp
AAGCTGCAGTACGGTCGGAATTCCGGGTCGACCACGCGTCCGCCTTCTTC
CCCACCACCACTCCTGCACTACGAGGCTCATAACTCTCGTCGGGAAACAT
GGCAACCGTCACAACACAAGCCTCGGCCGCTGTGTTCCGGCCATGCGCAT
CCAAATCCAGGTTCCTTACTGGGTCTTCGGGTAAATTAAATAGGGAAGTG
GCCTTGAAACCAGTGAGCTCAAGCGCTTCTTTCAAAGTTGAAGCCAAGGG
GGAGTGGTTACCGGGCTTGGCCTCGCCAACTTACCTCAACGGCAGCCTCC
CCGGTGACAATGGATTTGACCCCTTGGGGCTTGCCGAGGATCCTGAGAAC
TTGAAGTGGTATGTGCAAGCCGAGCTTGTGAATTCGCGCTGGGCCATGTT
GGGTGTTGTTGGAATGTTGTTGCCCGAAGTTTTCACAAAGATTGGAATTA
TTAATGTTCCTCAATGGTATGATGCTGGGAAGGCTGAGTACTTTGCATCA
TCATCGACCCTTTTCGTGATCGAGTTCATCTTGTTCCACTATGTGGAGAT
AAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTCAACCAAGACCCCA
TTTTCAAGCAGTACAGCTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGC
ATCTTCAACCCACTCAACTTTGCACCCCACTGATGAAGCAAAGGAGAAGG
AGCTTGCCAATGGGAAATTGGCAATGTTGGCATTCTTTGGGATTTATTGG
TCAGCACAATGGGACCAGGCAAAGGGCCAATTTGAAAACCTCCTGCAAAC
ATAATCTCTGAACCCATGGGAACAAAACCATTCGTCCAAAACCTTAAAGG
GGAAATTAATCCAAAAATGGAATTGGCAAATTCCGGGAACCCTGTTTTTT
TTTCTTTTTGTAACACATGAAA
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