CX675011

Overview
NameCX675011
Unique NameCX675011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675011_ssr739 microsatellite CX675011_ssr739:739..750. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10372 contig Csv1_Contig10372:341..1195. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_CYAA5 (Hydroxyacylglutathione hydrolase OS=Cyanothece sp. (strain ATCC 51142) GN=gloB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.427e-40
Identity = 93/242 (38.43%), Postives = 130/242 (53.72%), Query Frame = -1
Query:  148 DMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARY-GAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGS-----AAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 855
            D +  T  VVDP+ A PV++ L +    L  I              +L  ++    V GS  D+ RIPG  + L +GD   FAG    V   PGHTRGHI++YFP +       +F GDT+F+  CG+LFEGTP QM  S+ K+ +LPD T ++C HEYTL+N KFA++++ +N  LQ     + + R     T+P+ +  EK  NPFLR   P ++    I    D +   G IR  KDNF
Sbjct:   19 DANNNTAAVVDPAVAEPVLNCLDQLGAKLIAIFNTHHHADHVGGNKKLMEQFPDLCVYGSKEDQGRIPGQQVFLEEGDTVEFAGKTGKVYFVPGHTRGHIAYYFPPNENEEIGDLFCGDTIFAGGCGRLFEGTPAQMVESIGKLRNLPDHTRIWCAHEYTLNNLKFAVTVDKDNSDLQIRYQDVIKARKNEEATVPSLLGEEKKTNPFLRWDQPALQM---ITGMNDPARVFGKIRGMKDNF 257          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_THEEB (Hydroxyacylglutathione hydrolase OS=Thermosynechococcus elongatus (strain BP-1) GN=gloB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.139e-40
Identity = 87/205 (42.44%), Postives = 118/205 (57.56%), Query Frame = -1
Query:  244 DMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARY-GAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLR 855
            D  TGT  VVDP+E  PV+  L+     L  I               L++R+    V GS  D+ RIP   + L  GD+  F      V+  PGHTRGHI++Y P +  +F GDTLF   CG+LFEG+P QM  SL ++  LP++T V+C HEYT  N  FAL++E +N  LQ   A + + R++G  TIP+TI +EK+ NPFLR
Sbjct:   19 DPQTGTAAVVDPAEPEPVLAKLAELGATLRAIFNTHHHWDHVGANCALRSRFPDIAVYGSSEDQGRIPEQTVFLKAGDRVPFGQTYFDVLFVPGHTRGHIAYYAPTTGDLFCGDTLFGGGCGRLFEGSPAQMLDSLNQLRQLPEETRVWCAHEYTQKNLSFALTVEADNPTLQERYAQVCRDRAQGKATIPSTIGLEKATNPFLR 223          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_DECAR (Hydroxyacylglutathione hydrolase OS=Dechloromonas aromatica (strain RCB) GN=gloB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.139e-40
Identity = 88/196 (44.90%), Postives = 117/196 (59.69%), Query Frame = -1
Query:  244 VVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLR 831
            VVDP +A PV+  L      L  I              ELKAR+ A+V   G   + I G    L+ G+     G +V V+  PGHT GH+++Y PG  A+  GDTLF   CG+LFEGTP QM +SL  I +LP DT +YC HEYT  N +FAL++EPNN+ALQ+  A +A LR+ G+P++P  +  EK+ NPFLR
Sbjct:   26 VVDPGDAAPVLARLEAGGLMLEGILITHHHADHQGGVAELKARWQAEVYAPG--NESITGCSCPLSGGESIDVLGQKVTVMAVPGHTLGHLAYYAPG--ALLCGDTLFGAGCGRLFEGTPAQMSASLDSIAALPGDTLIYCAHEYTEMNLRFALAVEPNNQALQARVAKVAALRAAGLPSVPLILAEEKATNPFLR 217          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_BRASB (Hydroxyacylglutathione hydrolase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=gloB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.406e-40
Identity = 91/234 (38.89%), Postives = 126/234 (53.85%), Query Frame = -1
Query:  154 DMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKD 855
            D  TG    VD  EA P+I  L      LT I              ELK +YG +V+        I  +D+ +  GD          V++TPGHT  H+S+ F    AVF  DTLFS+ CG++FEGT   M+ SL K+ +LPDD  +YCGHEYT SN KFAL+++ +NEAL++ AA + +LR+    TIP+ +  EK  N FLR   P +   LR+   A   +  G +R+ K+
Sbjct:   21 DPATGATASVDAPEAGPIIRQLEAAGWTLTDILITHHHHDHVGAVAELKQKYGCRVVAPHDKTTAIADVDLRVGHGDVIKVGELLARVLETPGHTLDHVSYVFDADKAVFAADTLFSVGCGRVFEGTYPMMWDSLLKLRALPDDFRLYCGHEYTASNVKFALTVDGDNEALKARAAEVTRLRAANESTIPSLLGDEKQTNVFLRADDPAVAIKLRMKG-ATAEQVFGELRERKN 253          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_PSESM (Hydroxyacylglutathione hydrolase OS=Pseudomonas syringae pv. tomato GN=gloB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.221e-40
Identity = 87/215 (40.47%), Postives = 130/215 (60.47%), Query Frame = -1
Query:  220 DMDTGTVGVVDPSEAVPVIDALSRKNR-NLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAA--VFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQ 855
            D+ +    VVDP +A PV++ L++     LT I             +ELK    A+V+G   +   IP  D+ L D D+    G E  V   PGHT GHI+FY   +AA  +F+GDTLF+  CG+LFEGTPGQM +SL+++ +LPD T +YC HEYTLSN +FA ++EP+N+ +    A +  +RS+   ++P+++ +EK  NPFLRT    +++
Sbjct:   20 DLSSQQCVVVDPGDAAPVLEWLAQNPHCRLTDILITHHHNDHVGGVVELKQATRARVLGPAAES--IPARDVALADHDRLTVLGLEFVVHAVPGHTLGHIAFYHEDAAAPLLFSGDTLFAAGCGRLFEGTPGQMHASLERLAALPDSTLIYCAHEYTLSNLRFAQAVEPDNQDIAERLAQVTLMRSENRISLPSSLALEKRTNPFLRTRETSVKE 232          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_SHEB9 (Hydroxyacylglutathione hydrolase OS=Shewanella baltica (strain OS195) GN=gloB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.204e-39
Identity = 102/240 (42.50%), Postives = 133/240 (55.42%), Query Frame = -1
Query:  148 VGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFA----GHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLR--IPDTA----DDSEALGVIRQAKDNF 837
            V VVDP +A  VID L      L  I              EL+A    ++   G D ++I GI   L+   +  F       E+ V+D PGHT GHI++    + A+F GDTLFS  CG+LFEGTP QM +SLQ++  LP  T VYC HEYTLSN KFAL++ PNN ALQ Y      LR +   TIP+TI +E++ NPFLR S  EI  S++    D +    D+     ++RQ KDNF
Sbjct:   26 VYVVDPGDASVVIDYLEANQLTLVGILLTHHHNDHTGGVAELQAYSQDRLTVYGPDNEKIEGITHPLHATAQPRFTLDYISGELQVLDVPGHTAGHIAYVI--ADALFCGDTLFSGGCGRLFEGTPAQMLNSLQQLAQLPAYTRVYCAHEYTLSNLKFALAVNPNNCALQDYNERAIALRRQDKATIPSTIALERAINPFLRASDTEIVGSIKQHFSDLSHANLDELGGFTLLRQWKDNF 263          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_SHEAM (Hydroxyacylglutathione hydrolase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gloB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.573e-39
Identity = 96/243 (39.51%), Postives = 133/243 (54.73%), Query Frame = -1
Query:  148 DTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLEL----KARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAG--HEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRI---PDTADDSEALGVIRQAKDNF 849
            D G V VVDP +A+PVI+ L R N  LT +              +L    K+   +  +   V  D     D++  DGD    +G    V V+  PGHT  H++F      A+F GDTLFS  CG+LFEG  GQ++ SL K+ SLPDDT VYC HEYTLSN +FAL++EP N+ LQ Y   +  LR    P++P+T+  EK+ NPFLR  +  +  ++         D+   L ++R+ KDNF
Sbjct:   22 DGGAV-VVDPGDAMPVINTLQRLNLQLTAVLLTHHHRDHNGGINQLRDWAKSNGQSFTVYGAVTSDYS---DVLCRDGDTVDISGLTSPVRVLSVPGHTLDHLAFVVDN--ALFCGDTLFSGGCGRLFEGDAGQLYDSLAKLASLPDDTLVYCAHEYTLSNLRFALAVEPQNQCLQDYVKQVNNLREANKPSLPSTLGTEKAINPFLRVDTATVHAAVAAQAGQKVPDEVTCLALLRRWKDNF 258          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_VIBFM (Hydroxyacylglutathione hydrolase OS=Vibrio fischeri (strain MJ11) GN=gloB PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.576e-39
Identity = 89/230 (38.70%), Postives = 132/230 (57.39%), Query Frame = -1
Query:  148 VVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSL--RIPDTADDSEALGVIRQAKDNF 831
            VVDP +A PV++ +   +  L  I              EL  ++ +  +  G + + IP +   + DGD       +  V+  PGHT GH+++   G   +F GD LFS  CG+LFEGT  QMF+SLQK+ +LPD+T VYC HEYT SN  FAL++EP+N+ L  Y   +  LR+ G  TIP+T++ EK  NPFLRTS   +++S+  ++ D+  + E    +R+ KD F
Sbjct:   27 VVDPGDATPVLECIKEHDFILDAILITHHHHDHIGGVPELVRQFPSVNV-VGPENEPIPTLTHPVGDGDFVELFDEQFMVLGVPGHTNGHVAYV--GDEKLFCGDALFSAGCGRLFEGTAEQMFNSLQKMAALPDETEVYCAHEYTASNLAFALAVEPDNDYLLRYREKVLHLRAHGKSTIPSTLQREKLINPFLRTSEANVKKSVASKVQDST-EVEIFTALRRWKDEF 252          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_VIBF1 (Hydroxyacylglutathione hydrolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=gloB PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 4.576e-39
Identity = 90/230 (39.13%), Postives = 131/230 (56.96%), Query Frame = -1
Query:  148 VVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSL--RIPDTADDSEALGVIRQAKDNF 831
            VVDP +A PV++ +   +  L  I              EL  ++   V   G + + IP +   + DGD       +  V+  PGHT GH+++   G   +F GD LFS  CG+LFEGT  QMF+SLQK+ +LPD+T VYC HEYT SN  FAL++EP+N+ L  Y   +  LR+ G  TIP+T++ EK  NPFLRTS   +++S+  ++ D+  + E    +R+ KD F
Sbjct:   27 VVDPGDATPVLECIKEHDFILDAILITHHHHDHIGGVPELVRQF-PNVNVVGPENEPIPTLTHPVGDGDFVELFDEQFMVLGVPGHTNGHVAYI--GDEKLFCGDALFSAGCGRLFEGTAEQMFNSLQKMAALPDETEVYCAHEYTASNLAFALAVEPDNDYLLRYREKVLHLRAHGKSTIPSTLQREKLINPFLRTSEANVKKSVASKVQDST-EVEIFTALRRWKDEF 252          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_RHOFD (Hydroxyacylglutathione hydrolase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=gloB PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 4.576e-39
Identity = 92/233 (39.48%), Postives = 129/233 (55.36%), Query Frame = -1
Query:  148 VVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFY---FPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTA--DDSEALGVIRQAKDNF 831
            VVDP +A PV++AL +    L  I               L+A  GA+V G    ++ +P   I L    +    G    VID PGHT  HI+++     G+  +F GDTLFS  CG+LFEG+P QM +SL  + +LPD T V C HEYTLSN KFA ++EP N+AL  Y      LRS+  PT+P++I +E+  NPFLRT    + Q+++  D +  D+      +RQ K+ F
Sbjct:   25 VVDPGDAQPVLEALQQLGLQLETILVTHHHPDHTGGVAALRAATGAQVFGPA--REPMPEPLIRLTGDQQLQALGLNFQVIDVPGHTACHIAYFCADVDGAPLLFCGDTLFSAGCGRLFEGSPAQMLASLDTLAALPDATRVCCAHEYTLSNLKFACAVEPVNQALTDYTVKAEALRSQQQPTLPSSILLERQINPFLRTRQATVTQAVQAFDASARDEVSIFAALRQWKNQF 255          
The following BLAST results are available for this feature:
BLAST of CX675011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 290
Match NameE-valueIdentityDescription
GLO2_CYAA52.427e-4038.43Hydroxyacylglutathione hydrolase OS=Cyanothece sp.... [more]
GLO2_THEEB4.139e-4042.44Hydroxyacylglutathione hydrolase OS=Thermosynechoc... [more]
GLO2_DECAR4.139e-4044.90Hydroxyacylglutathione hydrolase OS=Dechloromonas ... [more]
GLO2_BRASB5.406e-4038.89Hydroxyacylglutathione hydrolase OS=Bradyrhizobium... [more]
GLO2_PSESM9.221e-4040.47Hydroxyacylglutathione hydrolase OS=Pseudomonas sy... [more]
GLO2_SHEB91.204e-3942.50Hydroxyacylglutathione hydrolase OS=Shewanella bal... [more]
GLO2_SHEAM1.573e-3939.51Hydroxyacylglutathione hydrolase OS=Shewanella ama... [more]
GLO2_VIBFM4.576e-3938.70Hydroxyacylglutathione hydrolase OS=Vibrio fischer... [more]
GLO2_VIBF14.576e-3939.13Hydroxyacylglutathione hydrolase OS=Vibrio fischer... [more]
GLO2_RHOFD4.576e-3939.48Hydroxyacylglutathione hydrolase OS=Rhodoferax fer... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59B01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59B01-C1-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675011 ID=CX675011; Name=CX675011; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTTTTTTTTGGGACAAATGACAAAGTAAAAATTAAAATTGAA
AACAAAAAAAAGGTTAAAATGTATACATTGGTGGTTTTATTTCATATTGG
CACCAGCTACTCTCTGTACACAAACAATAGTAGTTAAAACGATCCTAGAA
GTTATCCTTTGCTTGACGAATGACACCTAAGGCTTCTGAATCATCTGCAG
TGTCTGGAATGCGCAATGACTGCCGGATTTCTGGACTTGACGTGCGAAGA
AATGGATTACATGACTTCTCCATCTTTATTGTTGTTGGGATCGTGGGCAC
ACCCTTGCTTCGAAGTTGGGCTATGTGCGCTGCATATGATTGAAGGGCCT
CATTGTTGGGTTCTATGGACAATGCAAATTTTGAATTACTCAGCGTATAT
TCATGACCACAATATACATTTGTATCATCTGGCAGAGACATTATCTTCTG
AAGGGAAGAAAACATCTGCCCAGGGGTTCCTTCAAAAAGCTTGCCACAGG
ATAAGCTGAACAAGGTGTCCCCAGTAAAAACTGCCGCTGATCCAGGAAAG
TAGAAGCTAATATGACCTCGGGTATGGCCAGGCGTATCAATCACATGCAC
CTCATGACCAGCAAACATCCATTTGTCTCCATCATTCAAAACTATATCAA
TGCCAGGGATCCTATCCTTGTCTACTCCTGAACCAATCACCTTTGCACCG
TACCTTGCTTTTAGCTCCAAATTACCACCGGTGTGATCATGATGATGATG
TGTATTTAGAATGTAAGTCAGATTTCGGTTTTTCCTACTCAAAGCATCTA
TCACAGGAACAGCTTCAGAAGGATCAACAACTCCGACAGTACCTGTGTCC
ATGTC
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