CN186458

Overview
NameCN186458
Unique NameCN186458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186458 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.075e-25
Identity = 57/167 (34.13%), Postives = 103/167 (61.68%), Query Frame = -3
Query:  209 NFNSIAYQCLQKLPA--SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQN 703
            N  ++  + L+KL    S+ +  ++ D + F+ L  +G T+  +A+++ GR++P ++LE +   F+  YG   A  APA  +N EF   L + M++   +P  +  L +V+ +VSE++ VM+ENIEK+++RG++IELLVDKT  +   +  FR    ++RR +W++N
Sbjct:   24 NTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSDGLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGK-VAHNAPAYAMNDEFSRVLHQQMEFFSSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKN 188          
BLAST of CN186458 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.015e-24
Identity = 64/198 (32.32%), Postives = 103/198 (52.02%), Query Frame = -3
Query:  119 NFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGF---NCGK 703
            NF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R    +FL  VK  F + YG  +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+                    +C GF   NC K
Sbjct:   24 NFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIKLTIIIIIVSIVFIYIIVSLLCGGFTWPNCVK 219          
BLAST of CN186458 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 61/168 (36.31%), Postives = 94/168 (55.95%), Query Frame = -3
Query:  206 NFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEE--ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 703
            NF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  +K  F + YG  +A TA    +N EF   L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   24 NFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of CN186458 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24
Identity = 63/198 (31.82%), Postives = 102/198 (51.52%), Query Frame = -3
Query:  119 NFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGF---NCGK 703
            NF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  +K  F + YG  +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+                    +C GF   NC K
Sbjct:   24 NFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIISVVFIYIIVSPLCGGFTWPNCVK 219          
BLAST of CN186458 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 57/166 (34.34%), Postives = 95/166 (57.23%), Query Frame = -3
Query:  206 NFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 703
            NF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  VK  F + YG  +A TA    +N EF   L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   24 NFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNV 187          
BLAST of CN186458 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 57/166 (34.34%), Postives = 95/166 (57.23%), Query Frame = -3
Query:  206 NFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 703
            NF  +  Q L K+P+ NNK TY+   + F+Y+  +   Y  + D+   R     FL  +K  F + YG  +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   24 NFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of CN186458 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 61/191 (31.94%), Postives = 101/191 (52.88%), Query Frame = -3
Query:  134 NFNSIAYQCLQKLPASNNKF-TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHG 703
            N ++IA Q L+K+P + +   +Y+ D + F+    +G T   +ADE +GR+IP +FLE +   FV  YG     +A A  +N EF   L + ++Y  + P     ++++K ++++V+ VM+ENI+ +LDRGE++ELLVDKT N+      FR    +    +W +N                      CHG
Sbjct:   24 NASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRA-IHSAQAYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCKLTLLLILVLLVIIYIGVAFACHG 212          
BLAST of CN186458 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 57/166 (34.34%), Postives = 94/166 (56.63%), Query Frame = -3
Query:  206 NFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 703
            NF  +  Q L K+P+ NNK TY    + F+Y+  +   Y  + D+   R     FL  +K  F + YG  +A TA    +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F++T   + R M ++N+
Sbjct:   24 NFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of CN186458 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 58/165 (35.15%), Postives = 94/165 (56.97%), Query Frame = -3
Query:  209 NFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQN 703
            NF  +A + + K+P ++ K  Y  + H F+Y+ +N   +  +  E  G QIP  FL  ++ +F+  YG   +  +P    +  F   L+E M+Y   +P+  +K+  V  QVSE KG + + IEK + RGEKIE++VDKTE L  ++  F+S    ++RK+W QN
Sbjct:   27 NFIDLARRLITKIPPTSKKI-YTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFSQNSPTATYDP-FIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQN 187          
The following BLAST results are available for this feature:
BLAST of CN186458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA714_ARATH6.075e-2534.13Vesicle-associated membrane protein 714 OS=Arabido... [more]
VAMP7_MOUSE3.015e-2432.32Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_CHICK5.143e-2436.31Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_BOVIN8.773e-2431.82Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_RAT1.146e-2334.34Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_HUMAN1.954e-2334.34Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VA712_ARATH1.954e-2331.94Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAMP7_PONAB4.354e-2334.34Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAM7A_DICDI6.287e-2235.15Vesicle-associated membrane protein 7A OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002P01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002P01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186458 ID=CN186458; Name=CN186458; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTAAATACAAAGTCAAGATCATATATATTTATATATC
TCTTTCACAATATCATCACAGAAGCTCTTAGAAGAGCGTAATATAAGCCT
CCTGGAGAATAGCACTCATTTTCCGCAGTTGAAACCATGGCAAACAGAGA
GGACTATGATGAGGATCAAGGCAATCAGTATTCCCAAAACAATCAGCTTG
ATCTTCATATTTTGCAGCCACATTTTCCTCCGCATTTTGGTCCCCGTACT
CCGAAAGTCTTGTGCCTGCTGATGAAGGTTCTCAGTCTTATCGACCAGTA
GCTCAATCTTTTCCCCCCTATCTAAAACCTTTTCAATATTCTCCATCATA
ACACCTTTGACTTCTGAAACCTGAGCCTTAACCTTCGCAAGCTTGCTGAT
CTCCTCAGGATGATCAACACAGTACTGCATAAGTTCTTTCAATTTTGGTC
CAAATTCCTTGTTCAGGCCATTGGCAGGAGCCGTGGCAGCCTTTCCACCC
CCATATTTGGAAACAAATTCATCCTTGACGCGCTCCAGAAAAGCCATCGG
TATTTGTCTTCCGGACGATTCATCTGCGACCACACAATATGTGTAACCAT
TATCGACGAGATAATTGAAGGTGTGAGCATCACAGTTGTAGGTGAACTTG
TTGTTGGAAGCAGGGAGTTTCTGGAGGCACTGATAGGCTATGGAGTTGAA
ATTGC
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