CN186445

Overview
NameCN186445
Unique NameCN186445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12402 contig Csv1_Contig12402:30..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 4.062e-35
Identity = 74/197 (37.56%), Postives = 121/197 (61.42%), Query Frame = 1
Query:  139 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIIL 729
            MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++Y    Y+FH    D +  LC+ DD   R   F FL +I +RF  TYG    +A  Y MN EFS VL+ Q++++S++   D++   + ++ +++ +M+ NID V +RG+RLELL+DKT N+  ++  F+  +R     +  +N+KLT+ +II+
Sbjct:    1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIV 196          
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 6.928e-35
Identity = 76/201 (37.81%), Postives = 130/201 (64.68%), Query Frame = 1
Query:  136 EMAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRA-VLSAQAYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILI 732
            + ++++S VARG+V+L E +    N ++IA Q L K+P +N+   +Y+ D + F+    +G T   +A D+AGR+IP AFLE + + F K YG     +AQA  +N EF   L + M+Y  D P+   ++ ++K ++S+V+ VM+ENI+KVL+RG+++ELLVDKT N++     FR Q  + R  +W++N+K+ + ++ +I
Sbjct:    3 QQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKF-TYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAII 202          
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.491e-34
Identity = 75/201 (37.31%), Postives = 128/201 (63.68%), Query Frame = 1
Query:  136 EMAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRA-VLSAQAYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILI 732
            + ++++S VARG+V+L E +    N ++IA Q L K+P +N+   +Y+ D + F+    DG T   +A D+AGR+IP +FLE + + F K YG     +AQA  +N EF   L + M+Y  D P+   ++ ++K ++S+V+ VM+ENI+KVL+RG+++ELLVDKT N++     FR    + R  +W +N+K+ + ++ +I
Sbjct:    3 QQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKF-TYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAII 202          
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.660e-34
Identity = 76/208 (36.54%), Postives = 132/208 (63.46%), Query Frame = 1
Query:  136 EMAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLS-AQAYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVK-------LTVALIILI 732
            + ++++S VARG+V+LAE +    N +++A Q L K+P +N+   +Y+ D + F+    +G T   +  ++AGR+IP AFLE + + F K YG    S A+A  +N EF   L + M+Y +D P    +++++K ++++V+ VM+ENI+KVL+RG+++ELLVDKT N++     FR Q  + +  +W+ N+K       + VALI++I
Sbjct:    3 QQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKF-TYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVALILII 209          
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.965e-33
Identity = 73/198 (36.87%), Postives = 126/198 (63.64%), Query Frame = 1
Query:  145 ILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRA-VLSAQAYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILI 732
            +++S VARG+V+L E +    N +A+A Q L K+P +N+   +Y+ D + F+    +G T   +A ++ GR+IP AFLE + + F K YG     +AQA  +N EF   L + M+Y  D P+   ++ ++K ++++V+ VM+ENI+KVL+RG+++ELLVDKT N++     FR Q  + R  +W+ N+K+ + ++ +I
Sbjct:   71 LIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKF-TYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGII 267          
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.138e-30
Identity = 69/212 (32.55%), Postives = 125/212 (58.96%), Query Frame = 1
Query:  136 EMAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQ--------------------AYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKL 708
            +  +++S VA+G+VVLAE +  + N S IA Q L K+P  N S  +YS D + F+    +G   L +AD++ GR +PF FLE + + F K Y  ++ + +                    AY ++ EF  +L + M+Y    P    +++++K ++++V+ +M++NI+KVL+RG+++ELLVDKT N+Q     F++Q R+ R  +W +++++
Sbjct:    3 QKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLP-TNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQM 213          
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.764e-30
Identity = 65/196 (33.16%), Postives = 118/196 (60.20%), Query Frame = 1
Query:  142 AILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLS-AQAYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALI 723
            + ++S VARG+++LAE +    N  +IA Q L K+P +++S  +Y+ D + F+    DG     +A D+  ++I  AFLE +   F K YG    S A A  +N EF  V+ + M Y  D     +++ ++K ++S+V+++M+ENIDK ++RG+ L +L DKT N++     ++KQ  + R  +W++N+K+ + ++
Sbjct:    5 SFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVL 200          
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.399e-27
Identity = 60/196 (30.61%), Postives = 114/196 (58.16%), Query Frame = 1
Query:  145 ILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILI 732
            IL++ V+   V L E      N   +AR+++ KIP    S   Y+ + + FH    + L  LC+  +  G +IP  FL DI Q+F+++YG++          D F RVL ++M+YYS+ P ++++N +  ++S+ +  + + I+K + RG+++E++VDKT  +Q  +F F+  +   +  +WW+N KL +A+ +++
Sbjct:    6 ILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPT--SKKIYTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFSQNSPTATYDPFIRVLEERMKYYSN-PKSNKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQNKKLAIAIGLVV 198          
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.226e-23
Identity = 65/201 (32.34%), Postives = 117/201 (58.21%), Query Frame = 1
Query:  136 EMAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTY-GRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPN-ADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILI 732
            + ++ +S +ARG+V+L E +    N +++A Q L+ +P +N+   +Y+ D + F+    +G T   +A D+AGR IP AFLE + + F K Y G    + QA  +N EF   L + M+Y  D P+    + + K ++S+V+++M+ENI+KVL RG   E+L    +  Q    + R Q +R +   W++N+K+ + ++ +I
Sbjct:    3 QQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKF-TYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIK-RTQMKRKK---WFQNMKIKLIVLAII 198          
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: SEC22_SCHPO (Protein transport protein sec22 OS=Schizosaccharomyces pombe GN=sec22 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 50/202 (24.75%), Postives = 95/202 (47.03%), Query Frame = 1
Query:  139 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSA--QAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNV--KLTVALIILI 732
            M  LF L    SV          +    A+ IL ++   ++   S     Y FH    +G+  LC+ + +  R++ F++LE++   F  ++G   L    + Y    +F   + +    Y+     D ++++  E+  V  VM +NI+ +L RGD LE + D +++++ ++ +++K ARR      WR       +AL+ LI
Sbjct:    1 MLKLFRLPLAASVDDESTERNLESHKKQAKLILKRLSPTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFWNSFGEEALQPGLRPYAFV-QFDTFMQKSKRVYNTPRANDNLDKLNTELKDVTRVMTKNIEDLLYRGDSLEKMADLSSDLRYSSAKYKKAARRVNLEALWRQYGPVSIIALLFLI 201          
The following BLAST results are available for this feature:
BLAST of CN186445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
VAMP7_PONAB4.062e-3537.56Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VA722_ARATH6.928e-3537.81Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA721_ARATH4.491e-3437.31Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA726_ARATH7.660e-3436.54Putative vesicle-associated membrane protein 726 O... [more]
VA725_ARATH4.965e-3336.87Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA727_ARATH5.138e-3032.55Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA724_ARATH8.764e-3033.16Vesicle-associated membrane protein 724 OS=Arabido... [more]
VAM7A_DICDI1.399e-2730.61Vesicle-associated membrane protein 7A OS=Dictyost... [more]
VA723_ARATH1.226e-2332.34Vesicle-associated membrane protein 723 OS=Arabido... [more]
SEC22_SCHPO6.742e-1424.75Protein transport protein sec22 OS=Schizosaccharom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002O13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186445 ID=CN186445; Name=CN186445; organism=Citrus sinensis; type=EST; length=733bp
GCGTTTCTGATCGCCGAAACAACTAAAAGGAAAGAGAATTACCCCGGATC
TAGGTCAATTAATTGTTAATCAACTCGAGGAAGTGTTGTAGCTAATTGAT
CGGCGATTAAGCAATTAATCGCATAGAGAGAAAGAGAGATGGCGATACTT
TTCTCTTTAGTGGCTCGAGGATCGGTGGTGCTGGCGGAGTGCAGCGCCAC
GGCCACCAACGCCAGCGCCATCGCCAGACAAATACTGGATAAGATTCCGG
GGAATAATGACAGCCACGTGTCGTATTCTCAAGATCGTTATATCTTCCAC
GTCAAGCGCACCGATGGCCTCACCGTTCTCTGCATGGCGGATGATACCGC
CGGAAGGCGAATTCCTTTTGCATTTCTGGAAGACATTCATCAGAGATTTG
TGAAGACTTACGGCCGTGCAGTTCTTTCAGCCCAAGCTTATGGCATGAAT
GATGAATTTTCAAGGGTCTTGAGCCAGCAAATGGAGTATTATTCAGATGA
CCCAAATGCTGATAGGATAAATAGAATTAAAGGTGAAATGAGCCAGGTAA
GAAATGTCATGATAGAGAACATTGACAAAGTTTTAGAAAGAGGTGACCGC
TTGGAACTGTTGGTTGATAAAACTGCTAATATGCAAGGAAACACGTTCCG
CTTCAGAAAGCAGGCTAGGCGTTTCAGAAGCACAGTATGGTGGAGAAACG
TCAAGCTCACGGTTGCGCTGATTATCCTCATCC
back to top