CN186445

Overview
NameCN186445
Unique NameCN186445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: SEC22_YARLI (Protein transport protein SEC22 OS=Yarrowia lipolytica GN=SEC22 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.661e-12
Identity = 40/183 (21.86%), Postives = 88/183 (48.09%), Query Frame = 1
Query:  145 ILFSLVARGSVVLAECSATATNASAIARQ------ILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMND-EFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARR 672
            +L +L+ R S  L   ++       ++ Q      +  K+  N+    S     Y+ H    DG+   C+++ +  R++ F++L+++ + F K++G+  L          EF   + +    Y D      ++++  E+  V  VM +NI+ +L RG  L+ + D ++N++  + ++R+ A+R
Sbjct:    2 VLSTLIMRASDGLPLSASVDDGQENLSEQKKQCKLVTQKLSANSADRASIESGNYVIHYLMKDGIVYYCISESSYPRKLAFSYLDELDREFQKSHGQEALKEGVRPYKFVEFDTFMQKTKRVYQDTRATHNLDKLNTELQDVTRVMTKNIEDLLHRGHSLDHMSDLSSNLRTESKKYRRAAQR 184          
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: S22BA_DANRE (Vesicle-trafficking protein SEC22b-A OS=Danio rerio GN=sec22ba PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 40/170 (23.53%), Postives = 79/170 (46.47%), Query Frame = 1
Query:  223 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIILI 732
            A+Q+  K+   + +  +    +  FH     G+  L + +    +++ FA+LED+   F + YG  V S        EF   + + ++ Y D      +  I  E+  V+ +M+ NI++VL+RG+ L  L  K +N+   + ++R  A+   +   +  V     +II +
Sbjct:   37 AKQLCRKLNEQSPARCTLEAGKMCFHYVIEKGVCYLALCEAGFPKKLAFAYLEDLEGEFSEQYGAKVPSVSRPYSFIEFDTYIQKTIKSYIDSRARRNLGNINSELHDVQRIMVANIEEVLQRGEALSALDSKASNLSSLSKKYRSDAKYLNTRSTYAKVAAGAVIIITL 206          
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: SC22B_RAT (Vesicle-trafficking protein SEC22b OS=Rattus norvegicus GN=Sec22b PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 43/172 (25.00%), Postives = 83/172 (48.26%), Query Frame = 1
Query:  223 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQAR--RFRSTVWWRNVKLTVALIILI 732
            A+Q+  K+   + +  +       FH     G+  L + +    +++ FA+LED+H  F + +G+ V +        EF   + +  + Y D      +  I  E+  V+ +M+ NI++VL+RG+ L  L  K  N+   + ++R+ A+    RST + +   + V  I+LI
Sbjct:   37 AKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRST-YAKLAAVAVFFIMLI 207          
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: SC22B_PONAB (Vesicle-trafficking protein SEC22b OS=Pongo abelii GN=SEC22B PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 43/172 (25.00%), Postives = 83/172 (48.26%), Query Frame = 1
Query:  223 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQAR--RFRSTVWWRNVKLTVALIILI 732
            A+Q+  K+   + +  +       FH     G+  L + +    +++ FA+LED+H  F + +G+ V +        EF   + +  + Y D      +  I  E+  V+ +M+ NI++VL+RG+ L  L  K  N+   + ++R+ A+    RST + +   + V  I+LI
Sbjct:   37 AKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRST-YAKLAAVAVFFIMLI 207          
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: SC22B_MOUSE (Vesicle-trafficking protein SEC22b OS=Mus musculus GN=Sec22b PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 43/172 (25.00%), Postives = 83/172 (48.26%), Query Frame = 1
Query:  223 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQAR--RFRSTVWWRNVKLTVALIILI 732
            A+Q+  K+   + +  +       FH     G+  L + +    +++ FA+LED+H  F + +G+ V +        EF   + +  + Y D      +  I  E+  V+ +M+ NI++VL+RG+ L  L  K  N+   + ++R+ A+    RST + +   + V  I+LI
Sbjct:   37 AKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRST-YAKLAAVAVFFIMLI 207          
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: SC22B_HUMAN (Vesicle-trafficking protein SEC22b OS=Homo sapiens GN=SEC22B PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 43/172 (25.00%), Postives = 83/172 (48.26%), Query Frame = 1
Query:  223 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQAR--RFRSTVWWRNVKLTVALIILI 732
            A+Q+  K+   + +  +       FH     G+  L + +    +++ FA+LED+H  F + +G+ V +        EF   + +  + Y D      +  I  E+  V+ +M+ NI++VL+RG+ L  L  K  N+   + ++R+ A+    RST + +   + V  I+LI
Sbjct:   37 AKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRST-YAKLAAVAVFFIMLI 207          
BLAST of CN186445 vs. ExPASy Swiss-Prot
Match: SC22B_CRIGR (Vesicle-trafficking protein SEC22b OS=Cricetulus griseus GN=Sec22b PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 43/172 (25.00%), Postives = 83/172 (48.26%), Query Frame = 1
Query:  223 ARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQAR--RFRSTVWWRNVKLTVALIILI 732
            A+Q+  K+   + +  +       FH     G+  L + +    +++ FA+LED+H  F + +G+ V +        EF   + +  + Y D      +  I  E+  V+ +M+ NI++VL+RG+ L  L  K  N+   + ++R+ A+    RST + +   + V  I+LI
Sbjct:   37 AKQLFRKLNEQSPTRCTLGAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRST-YAKLAAVAVFFIMLI 207          
The following BLAST results are available for this feature:
BLAST of CN186445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SEC22_YARLI1.661e-1221.86Protein transport protein SEC22 OS=Yarrowia lipoly... [more]
S22BA_DANRE6.310e-1223.53Vesicle-trafficking protein SEC22b-A OS=Danio reri... [more]
SC22B_RAT3.132e-1125.00Vesicle-trafficking protein SEC22b OS=Rattus norve... [more]
SC22B_PONAB3.132e-1125.00Vesicle-trafficking protein SEC22b OS=Pongo abelii... [more]
SC22B_MOUSE3.132e-1125.00Vesicle-trafficking protein SEC22b OS=Mus musculus... [more]
SC22B_HUMAN3.132e-1125.00Vesicle-trafficking protein SEC22b OS=Homo sapiens... [more]
SC22B_CRIGR3.132e-1125.00Vesicle-trafficking protein SEC22b OS=Cricetulus g... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002O13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186445 ID=CN186445; Name=CN186445; organism=Citrus sinensis; type=EST; length=733bp
GCGTTTCTGATCGCCGAAACAACTAAAAGGAAAGAGAATTACCCCGGATC
TAGGTCAATTAATTGTTAATCAACTCGAGGAAGTGTTGTAGCTAATTGAT
CGGCGATTAAGCAATTAATCGCATAGAGAGAAAGAGAGATGGCGATACTT
TTCTCTTTAGTGGCTCGAGGATCGGTGGTGCTGGCGGAGTGCAGCGCCAC
GGCCACCAACGCCAGCGCCATCGCCAGACAAATACTGGATAAGATTCCGG
GGAATAATGACAGCCACGTGTCGTATTCTCAAGATCGTTATATCTTCCAC
GTCAAGCGCACCGATGGCCTCACCGTTCTCTGCATGGCGGATGATACCGC
CGGAAGGCGAATTCCTTTTGCATTTCTGGAAGACATTCATCAGAGATTTG
TGAAGACTTACGGCCGTGCAGTTCTTTCAGCCCAAGCTTATGGCATGAAT
GATGAATTTTCAAGGGTCTTGAGCCAGCAAATGGAGTATTATTCAGATGA
CCCAAATGCTGATAGGATAAATAGAATTAAAGGTGAAATGAGCCAGGTAA
GAAATGTCATGATAGAGAACATTGACAAAGTTTTAGAAAGAGGTGACCGC
TTGGAACTGTTGGTTGATAAAACTGCTAATATGCAAGGAAACACGTTCCG
CTTCAGAAAGCAGGCTAGGCGTTTCAGAAGCACAGTATGGTGGAGAAACG
TCAAGCTCACGGTTGCGCTGATTATCCTCATCC
back to top