CN186444

Overview
NameCN186444
Unique NameCN186444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:820..1607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI4_SULIA (Putative thiazole biosynthetic enzyme OS=Sulfolobus islandicus (strain M.16.27) GN=M1627_1786 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = -3
Query:  495 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 785
            + AK VV + GHD    +   +++  +G++  +PG K+     AE+  V  T +V  G+   GM V E+ G PRMGP FGAM++SG+  A    K L
Sbjct:  166 ISAKAVVDATGHDAEVISVAARKIPELGIV--IPGEKSAYSERAEELTVINTGKVAEGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKAVAEEITKDL 260          
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI4_PYRCJ (Putative thiazole biosynthetic enzyme OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=Pcal_1555 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.574e-11
Identity = 33/98 (33.67%), Postives = 55/98 (56.12%), Query Frame = -3
Query:  489 EAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 782
            +AK V+ + GHD    +   +++  +G+  ++ G K+     +E  +V  T  V PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L +
Sbjct:  159 QAKAVIDATGHDAEVVSVAARKVPELGL--QLQGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGRKVAEVVAKDLAE 254          
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI4_METM7 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0597 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.574e-11
Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = -3
Query:  495 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 785
            + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ L
Sbjct:  165 ISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKL 259          
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI4_PYRAE (Putative thiazole biosynthetic enzyme OS=Pyrobaculum aerophilum GN=PAE0175 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.974e-11
Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = -3
Query:  495 EAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 782
            +AK V+ + GHD    +   +++  +G+  +V G K+     +E  +V  T  V PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L
Sbjct:  159 QAKAVIDATGHDAEVVSVAARKVPELGI--QVVGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGKKVAEVVYKDL 252          
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI4_NATPD (Putative thiazole biosynthetic enzyme OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=NP5174A PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = -3
Query:  492 MEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 785
            +EA +V+ + GHD          G   A G++     + GM +           + PG  ++ +  +EDA+V  T     G+IVTGM  A   G PRMGPTFGAM++SG++AA  AL  LG
Sbjct:  172 VEADLVIDATGHDAVAVSKLQERGVLNAPGIEHADEHNTGMDQTGDDSYGAPGHDSPGHDSMWVGQSEDAVVEHTGLAHEGLIVTGMATATTYGLPRMGPTFGAMLLSGKRAAQAALDELG 292          
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI4_METM6 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_1321 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = -3
Query:  495 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 785
            + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ +
Sbjct:  165 ISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKM 259          
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI4_METM5 (Putative thiazole biosynthetic enzyme OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0226 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = -3
Query:  495 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 785
            + AK V+ S GHD     T  ++ K +G+  EVPG K++     E+++ R TRE+ PG+ V GM         RMG  FG M +SG+K A + L+ +
Sbjct:  165 ISAKYVIDSTGHDASAVHTLARKNKDLGI--EVPGEKSMWAEKGENSLTRNTREIFPGLYVCGMAANAYHAGYRMGAIFGGMYLSGKKCAEMILEKM 259          
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI4_HALMA (Putative thiazole biosynthetic enzyme OS=Haloarcula marismortui GN=rrnAC1782 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 42/121 (34.71%), Postives = 62/121 (51.24%), Query Frame = -3
Query:  495 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIE------------------------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 785
            +EA +V+ + GHD    A  VK+L   G++                         + PG  ++ +  +EDA+V  T     G++VTGM  A   G PRMGPTFGAM++SG++AA +AL  L
Sbjct:  175 VEADLVIDATGHD----AMAVKKLDERGVLNAPGLEDEASGMDQTDDDTYGAPGHDSPGHDSMWVGESEDAVVEHTGLAHDGLVVTGMATATTYGLPRMGPTFGAMLVSGKRAAQVALDEL 291          
The following BLAST results are available for this feature:
BLAST of CN186444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
THI4_SULIA2.053e-1137.11Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_PYRCJ4.574e-1133.67Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_METM74.574e-1138.14Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_PYRAE5.974e-1135.42Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_NATPD7.803e-1136.36Putative thiazole biosynthetic enzyme OS=Natronomo... [more]
THI4_METM67.803e-1137.11Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_METM57.803e-1137.11Putative thiazole biosynthetic enzyme OS=Methanoco... [more]
THI4_HALMA7.803e-1134.71Putative thiazole biosynthetic enzyme OS=Haloarcul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002O13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186444 ID=CN186444; Name=CN186444; organism=Citrus sinensis; type=EST; length=787bp
TTTTTTTGCACAAAACGAGTAAGCTCAGATCTTCATCATTGATCTTACCC
CTTCAGCACTGTCCCATTGGCTGATGCCTCAAGTTATAAACATACAAAGC
AAAGAAAAGGGAACAGCCCAAGGGCAGTCTTACACATAATACAGATAACA
AGGACTAGATACGCAACTGCAAATTCACCCCCGAAAAACTCACAACGGTT
TCTTACAAGAGGAGAAAGAAATTAAAATTAAAGGTTGCATGATGGACCGG
AAACAAACACTTTATTCACAAAACCTCACAACATCATCTCATTATTCGCA
TCAACCATCCATCACAACCACCTAAATACAACTACTTTTTTGCCAGAGTT
TATTTGCATGCACACAGCTGATGAGTGATGATGCCTGTTATTATCAAATT
AACCATCAGCAGTCTCAGCAGAATCAGCTGCAGCTAAGATCAGCTCAGGG
TGAACACCTCCCACATATGTACCGTCTAATGCATTCGGCTGGCCCAGTGA
CTTCAACGCCAAATGCGCAGCCTTCTGCCCCGATATCATCATTGCTCCAA
ATGTTGGCCCCATTCTAGGAGCACCATCAATCTCGGCAACTTCCATGCCG
GTAACTATCATACCAGGCACAACCTCCCTGGTCAGCCTCACAATAGCATC
TTCTGCAGAGTTCATGTCCAGTGCCTTCATTCCAGGCACTTCCTCAATCA
TTCCGATACTCTTCAACCTCTTTACTCCAGTGGCCCCAAAAGGCCCATCA
TGGCCACAAGAGCTCACAACCACCTTCGCTTCCATTA
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