CX674998

Overview
NameCX674998
Unique NameCX674998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: HCD2_DROME (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Drosophila melanogaster GN=scu PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.314e-13
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = -3
Query:   80 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEKKILEKIPL-GRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMVM 421
            G I+N ASV    G I QA YSA+KA V+G+T  +A++ +++ I + TIAPG   + M A L E +   + + IP   R G+P E   L + +  NP    + G+V+ IDG + M
Sbjct:  142 GVIVNTASVAAFDGQIGQAAYSASKAAVVGMTLPIARDLSTQGIRICTIAPGLFNTPMLAALPEKVRTFLAKSIPFPQRLGEPSEYAHLVQAIYENP---LLNGEVIRIDGALRM 253          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: YOHF_ECOLI (Uncharacterized oxidoreductase yohF OS=Escherichia coli (strain K12) GN=yohF PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 52/169 (30.77%), Postives = 77/169 (45.56%), Query Frame = -3
Query:   80 KWQDVIDLNLTGVFLCTQVHIPMILLVMLMDAKVYWN*GHLSLQXXXXXXXXXXKGRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMVM 586
            +W+ +  +++ G FLC+Q+    ++                              GRIINI SV       D + Y+AAK  + GLTKA+A E     I VN +APG IA+ M      D++      IPL R+G   E+  L  +L  +    Y TGQ L +DGG ++
Sbjct:  103 EWRKIFTVDVDGAFLCSQIAARQMV-------------------------KQGQGGRIINITSVHEHTPLPDASAYTAAKHALGGLTKAMALELVRHKILVNAVAPGAIATPMNGMDDSDVKPDAEPSIPLRRFGATHEIASLVVWLC-SEGANYTTGQSLIVDGGFML 245          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: DHGA_BACME (Glucose 1-dehydrogenase A OS=Bacillus megaterium GN=gdhA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.716e-13
Identity = 55/168 (32.74%), Postives = 84/168 (50.00%), Query Frame = -3
Query:   86 WQDVIDLNLTGVFLCTQVHIPMILLVMLMDAKVYWN*GHLSLQXXXXXXXXXXKGRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEKK--ILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGM 583
            W  VID NLTG FL ++  I   +                             KG +IN++SV  ++      +Y+A+K G+  +T+ +A EYA + I VN I PG + + + A+   D E++  +   IP+G  G+PEEV  +  FLA + A+ Y+TG  L  DGGM
Sbjct:  109 WNKVIDTNLTGAFLGSREAIKYFV-------------------------ENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPEQRADVESMIPMGYIGKPEEVAAVAAFLASSQAS-YVTGITLFADGGM 250          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: SOU2_CANAL (Sorbose reductase homolog SOU2 OS=Candida albicans GN=SOU2 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 55/168 (32.74%), Postives = 84/168 (50.00%), Query Frame = -3
Query:   89 KWQDVIDLNLTGVFLCTQVHIPMILLVMLMDAKVYWN*GHLSLQXXXXXXXXXXKGRIINIASVVGLVGNIDQ--ANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGG 586
            KW  V+D++L  V+ C  V  P+                               KG  I  AS+   + N+ Q  A Y+AAKAGV  L+K+++ E+A     VN+++PG+IA+ ++     D++ K L+  PLGR  +P E+VG   +LA + A  Y TG  L +DGG
Sbjct:  137 KWNKVVDVDLNSVYYCAHVVGPIF--------------------------RKKGKGSFIFTASMSASIVNVPQLQAAYNAAKAGVKHLSKSLSVEWAPF-ARVNSVSPGYIATHLSEFADPDVKSKWLQLTPLGREAKPRELVGAYLYLA-SDAASYTTGADLAVDGG 276          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: HCD2_RAT (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Rattus norvegicus GN=Hsd17b10 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = -3
Query:   80 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEKKILEKIPL-GRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMVM 421
            G IIN ASV    G + QA YSA+K G++G+T  +A++ A   I V TIAPG  A+ +   L + +   +  ++P   R G P E   L + +  NP   ++ G+V+ +DG + M
Sbjct:  148 GVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVVTIAPGLFATPLLTTLPDKVRNFLASQVPFPSRLGDPAEYAHLVQMVIENP---FLNGEVIRLDGAIRM 259          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: DHG3_BACME (Glucose 1-dehydrogenase 3 OS=Bacillus megaterium GN=gdhIII PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 55/168 (32.74%), Postives = 85/168 (50.60%), Query Frame = -3
Query:   86 WQDVIDLNLTGVFLCTQVHIPMILLVMLMDAKVYWN*GHLSLQXXXXXXXXXXKGRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTA-KLGEDLEKKILEK-IPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGM 583
            W  VID NLTG FL ++  I   +                             KG +IN++SV  ++      +Y+A+K G+  +T+ +A EYA + I VN I PG + + + A K  + +++  +E  IP+G  G+PEEV  +  FLA + A+ Y+TG  L  DGGM
Sbjct:  109 WNKVIDTNLTGAFLGSREAIKYFV-------------------------ENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKQMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPVQRADVESMIPMGYIGKPEEVAAVAAFLASSQAS-YVTGITLFADGGM 250          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: ARDH_PICST (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Pichia stipitis GN=ARDH PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = -3
Query:   89 GRIINIASVVGLVGNIDQAN--YSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKL--GEDLEKKILE-KIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGG 421
            G II I S+ G + N  Q    Y+ +KAGVI L +++A E+A  NI VNT++PG+I + +T  +  G    K+  E KIP+ R  +P+E VG   +LA   A+ Y TG  L +DGG
Sbjct:  159 GSIILIGSMSGTIVNDPQPQCMYNMSKAGVIHLVRSLACEWAKYNIRVNTLSPGYILTPLTRNVISGHTEMKEAWESKIPMKRMAEPKEFVGSILYLASETASSYTTGHNLVVDGG 274          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: ARDH_CANTR (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Candida tropicalis GN=ARD PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 45/116 (38.79%), Postives = 70/116 (60.34%), Query Frame = -3
Query:   89 GRIINIASVVGLVGNIDQAN--YSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKL---GEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGG 421
            G II I S+ G + N  Q    Y+ +KAGVI L +++A E+A  NI VNT++PG+I + +T  +     +++ +   KIP+ R  +P+E VG   +LA + A+ Y TG  L +DGG
Sbjct:  163 GSIILIGSMSGTIVNDPQPQCMYNMSKAGVIHLARSLACEWAKYNIRVNTLSPGYILTPLTRNVISGHTEMKTEWESKIPMKRMAEPKEFVGSILYLASDSASSYTTGHNLVVDGG 278          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: YXJF_BACSU (Uncharacterized oxidoreductase yxjF OS=Bacillus subtilis GN=yxjF PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 50/123 (40.65%), Postives = 67/123 (54.47%), Query Frame = -3
Query:   89 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEK-------KILEK-----IPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGG 421
            GRIINIASV GLVG   ++ Y++AK GVIGLTK  A E A   I VN + PG++ + +      DL K        +LE+     +P  R    +E+     FLA   A G +TGQ + +DGG
Sbjct:  132 GRIINIASVNGLVGFAGKSAYNSAKHGVIGLTKVGALEGAPHGITVNALCPGYVDTQLVRNQLSDLSKTRNVPYDSVLEQVIFPLVPQKRLLSVKEIADYAVFLASEKAKG-VTGQAVVLDGG 253          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: GRDH1_ARATH (Glucose and ribitol dehydrogenase homolog 1 OS=Arabidopsis thaliana GN=At1g54870 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = -3
Query:   80 IINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMT-AKLGEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMVM 415
            IIN  SV    GN    +Y+A K  ++  T+ +A + A + I VN +APG I + +  A   E+  K    ++P+ R GQP EV     FLA N  + Y TGQVL+ +GG V+
Sbjct:  174 IINTTSVNAYKGNASLLDYTATKGAIVAFTRGLALQLAEKGIRVNGVAPGPIWTPLIPASFNEEKIKNFGSEVPMKRAGQPIEVAPSYVFLACNHCSSYFTGQVLHPNGGAVV 286          
The following BLAST results are available for this feature:
BLAST of CX674998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
HCD2_DROME1.314e-1338.263-hydroxyacyl-CoA dehydrogenase type-2 OS=Drosophi... [more]
YOHF_ECOLI1.716e-1330.77Uncharacterized oxidoreductase yohF OS=Escherichia... [more]
DHGA_BACME1.716e-1332.74Glucose 1-dehydrogenase A OS=Bacillus megaterium G... [more]
SOU2_CANAL2.241e-1332.74Sorbose reductase homolog SOU2 OS=Candida albicans... [more]
HCD2_RAT2.241e-1335.653-hydroxyacyl-CoA dehydrogenase type-2 OS=Rattus n... [more]
DHG3_BACME2.241e-1332.74Glucose 1-dehydrogenase 3 OS=Bacillus megaterium G... [more]
ARDH_PICST2.241e-1341.38D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]
ARDH_CANTR2.241e-1338.79D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]
YXJF_BACSU2.927e-1340.65Uncharacterized oxidoreductase yxjF OS=Bacillus su... [more]
GRDH1_ARATH2.927e-1338.05Glucose and ribitol dehydrogenase homolog 1 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59A04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59A04-A7-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674998 ID=CX674998; Name=CX674998; organism=Citrus sinensis; type=EST; length=594bp
TTTCAACCCATTCGATCTTACATATGATAGCTACAGGTCAGAACTGAAAC
TAAACCAGGCATAATGGGTCACTGACCTACATAACCATTCCTCCGTCAAT
ATTAAGCACCTGTCCAGTAATGTAACCGGTTGCGGGATTGATGGCCAAGA
ATTCCTCCAGTCCAACAACTTCTTCAGGTTGGCCATACCTTCCTAACGGG
ATTTTCTCCAAGATCTTCTTTTCTAGGTCTTCGCCAAGCTTGGCGGTCAT
ATCAGACGCGATGAATCCTGGTGCAATAGTATTGACATTAATGTTTCTGC
TTGCATATTCCTTTGCAACAGCTTTTGTCAGGCCAATAACACCTGCTTTT
GCAGCACTGTAATTGGCTTGGTCAATATTTCCAACCAGACCAACAACTGA
TGCTATATTGATTATTCTTCCCTTTTTCTTCTTCATCATGATTTTGGCTG
CTGCCTGCAAAGATAAATGGCCTCAGTTCCAATATACTTTAGCATCCATT
AGCATAACTAGTAAGATCATAGGAATGTGCACCTGTGTACACAGGAATAC
ACCTGTAAGATTCAGATCAATAACGTCCTGCCATTTGTGACCCT
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