CX674998

Overview
NameCX674998
Unique NameCX674998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 OS=Oryctolagus cuniculus GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 47/167 (28.14%), Postives = 80/167 (47.90%), Query Frame = -3
Query:   89 WQDVIDLNLTGVFLCTQVHIPMILLVMLMDAKVYWN*GHLSLQXXXXXXXXXXKGRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGED--LEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGG 583
            W  ++D+N+  + L T+  +P +                               G ++ +AS+           Y+ +K  ++GLTK +A E A++NI VN +APG I +  +  L ED   E+ I++K+ + R G+PEE  G+  FL    A+ YITG+ + + GG
Sbjct:  116 WDKILDINVKAMALMTKAVVPEM--------------------------EKRGGGSVVIVASIAAFNPFSGLGPYNVSKTALVGLTKNLALELAAQNIRVNCLAPGLIKTSFSKALWEDKAQEENIIQKLRIRRLGKPEECAGIVSFLCSEDAS-YITGETVVVAGG 255          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: ARDH_CANAL (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Candida albicans GN=ARD1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.927e-13
Identity = 45/116 (38.79%), Postives = 69/116 (59.48%), Query Frame = -3
Query:   89 GRIINIASVVGLVGNIDQAN--YSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKL---GEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGG 421
            G II I S+ G + N  Q    Y+ +KAGVI L +++A E+A  NI VNT++PG+I + +T  +     +++ +   KIP+ R  +P+E VG   +LA   A+ Y TG  L +DGG
Sbjct:  162 GSIILIGSMSGTIVNDPQPQCMYNMSKAGVIHLARSLACEWAKYNIRVNTLSPGYILTPLTRNVISGHTEMKTEWESKIPMKRMAEPKEFVGSILYLASESASSYTTGHNLVVDGG 277          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: Y2146_BRAJA (Probable short-chain type dehydrogenase/reductase blr2146 OS=Bradyrhizobium japonicum GN=blr2146 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13
Identity = 51/168 (30.36%), Postives = 80/168 (47.62%), Query Frame = -3
Query:   83 WQDVIDLNLTGVFLCTQVHIPMILLVMLMDAKVYWN*GHLSLQXXXXXXXXXXKGRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASD-MTAKLGEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMV 583
            W   +  NL G  LC +  IP ++                              G I+N++S  GL G+    +Y+A+KA +  L+ ++A +Y    I  N +APG I ++ + AKL   ++  +     L R G+PE+V  L  FL  + A  +ITGQV+ IDGGM+
Sbjct:  111 WDQTMATNLRGTLLCCRQAIPRMIA--------------------------RGGGAIVNMSSCQGLSGDTALTSYAASKAAMNMLSSSLATQYGHAQIRCNAVAPGLIMTERLLAKLDACMQTHLRRHQLLPRVGRPEDVAALVAFLLSDDA-AFITGQVVCIDGGML 251          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13
Identity = 41/118 (34.75%), Postives = 67/118 (56.78%), Query Frame = -3
Query:   83 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEKK-----ILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMV 421
            G ++ I+S+ G      +A Y A K  +  LT+ +A E+A  NI VN + PG IA+ M     +D E+K     ++++  L R G+P+E+  +  FL   PA  Y+TGQ++ +DGG +
Sbjct:  139 GNVVFISSISGASALPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSMVEMTIQDPEQKENLDKLIDRCALRRMGEPKELAAVVAFLCF-PAASYVTGQIIYVDGGFM 255          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: HCD2_MOUSE (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Mus musculus GN=Hsd17b10 PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = -3
Query:   80 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEKKILEKIPL-GRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMVM 421
            G IIN ASV    G + QA YSA+K G+ G+T  +A++ A   I V TIAPG  A+ +   L E +   +  ++P   R G P E   L + +  NP   ++ G+V+ +DG + M
Sbjct:  148 GVIINTASVAAFEGQVGQAAYSASKGGIDGMTLPIARDLAPTGIRVVTIAPGLFATPLLTTLPEKVRNFLASQVPFPSRLGDPAEYAHLVQTIIENP---FLNGEVIRLDGAIRM 259          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: DHG4_BACME (Glucose 1-dehydrogenase 4 OS=Bacillus megaterium GN=gdhIV PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13
Identity = 55/168 (32.74%), Postives = 85/168 (50.60%), Query Frame = -3
Query:   86 WQDVIDLNLTGVFLCTQVHIPMILLVMLMDAKVYWN*GHLSLQXXXXXXXXXXKGRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTA-KLGEDLEKKILEK-IPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGM 583
            W  VID NLTG FL ++  I   +                             KG +IN++SV  ++      +Y+A+K G+  +T+ +A EYA + I VN I PG + + + A K  + +++  +E  IP+G  G+PEEV  +  FLA + A+ Y+TG  L  DGGM
Sbjct:  109 WNKVIDTNLTGAFLGSREAIKYFV-------------------------ENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPVQRADVESMIPMGYIGKPEEVAAVAAFLASSQAS-YVTGITLFADGGM 250          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: MTDH_UROFA (Probable NADP-dependent mannitol dehydrogenase OS=Uromyces fabae GN=PIG8 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.993e-13
Identity = 46/164 (28.05%), Postives = 85/164 (51.83%), Query Frame = -3
Query:   89 VIDLNLTGVFLCTQVHIPMILLVMLMDAKVYWN*GHLSLQXXXXXXXXXXKGRIINIASVVGLVGN--IDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGG 574
            + D+N+ GVF C Q             A+++ + G               +G ++ I+S+   + N  + Q  Y+++KA V  L K +A E+A ++I VN ++PG++ +D T+ + + L     + +PL R+ +PEE+ G +  L ++P   Y+TG    +DGG
Sbjct:  114 IFDVNVFGVFNCAQAM-----------AQIWTDTGF-------------QRGSVVIISSMSSQICNRPLTQCFYNSSKAAVSNLGKCLAAEWAEKSIRVNMLSPGYVKTDQTSHMDQKLRDFQADGVPLKRFAEPEEMAG-QAILLLSPKASYMTGGEYFVDGG 252          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: MTDH_AGABI (NADP-dependent mannitol dehydrogenase OS=Agaricus bisporus GN=mtdH PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 4.993e-13
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = -3
Query:   80 RIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMVM 418
            +IIN +S   L G++ Q  Y+++KA    L K +A E+AS  I VN ++PG++ +D TA + + +       IPL R+ QPEE+ G    L  + AT Y+TG    IDGG ++
Sbjct:  153 QIINQSS---LNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLNRFAQPEEMTGQAILLLSDHAT-YMTGGEYFIDGGQLI 261          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: HDHA_ECOLI (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli (strain K12) GN=hdhA PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.993e-13
Identity = 39/114 (34.21%), Postives = 69/114 (60.53%), Query Frame = -3
Query:   83 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASD-MTAKLGEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMV 421
            G I+ I S+     NI+  +Y+++KA    L + +A +   +NI VN IAPG I +D + + +  ++E+K+L+  P+ R GQP+++     FL  +PA  +++GQ+L + GG V
Sbjct:  139 GVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLC-SPAASWVSGQILTVSGGGV 251          
BLAST of CX674998 vs. ExPASy Swiss-Prot
Match: HDHA_ECO57 (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli O157:H7 GN=hdhA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.993e-13
Identity = 39/114 (34.21%), Postives = 69/114 (60.53%), Query Frame = -3
Query:   83 GRIINIASVVGLVGNIDQANYSAAKAGVIGLTKAVAKEYASRNINVNTIAPGFIASD-MTAKLGEDLEKKILEKIPLGRYGQPEEVVGLEEFLAINPATGYITGQVLNIDGGMV 421
            G I+ I S+     NI+  +Y+++KA    L + +A +   +NI VN IAPG I +D + + +  ++E+K+L+  P+ R GQP+++     FL  +PA  +++GQ+L + GG V
Sbjct:  139 GVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQDIANAALFLC-SPAASWVSGQILTVSGGGV 251          
The following BLAST results are available for this feature:
BLAST of CX674998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
DHRS4_RABIT2.927e-1328.14Dehydrogenase/reductase SDR family member 4 OS=Ory... [more]
ARDH_CANAL2.927e-1338.79D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]
Y2146_BRAJA3.823e-1330.36Probable short-chain type dehydrogenase/reductase ... [more]
TRN2_HYONI3.823e-1334.75Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
HCD2_MOUSE3.823e-1336.523-hydroxyacyl-CoA dehydrogenase type-2 OS=Mus musc... [more]
DHG4_BACME3.823e-1332.74Glucose 1-dehydrogenase 4 OS=Bacillus megaterium G... [more]
MTDH_UROFA4.993e-1328.05Probable NADP-dependent mannitol dehydrogenase OS=... [more]
MTDH_AGABI4.993e-1338.05NADP-dependent mannitol dehydrogenase OS=Agaricus ... [more]
HDHA_ECOLI4.993e-1334.217-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
HDHA_ECO574.993e-1334.217-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59A04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59A04-A7-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674998 ID=CX674998; Name=CX674998; organism=Citrus sinensis; type=EST; length=594bp
TTTCAACCCATTCGATCTTACATATGATAGCTACAGGTCAGAACTGAAAC
TAAACCAGGCATAATGGGTCACTGACCTACATAACCATTCCTCCGTCAAT
ATTAAGCACCTGTCCAGTAATGTAACCGGTTGCGGGATTGATGGCCAAGA
ATTCCTCCAGTCCAACAACTTCTTCAGGTTGGCCATACCTTCCTAACGGG
ATTTTCTCCAAGATCTTCTTTTCTAGGTCTTCGCCAAGCTTGGCGGTCAT
ATCAGACGCGATGAATCCTGGTGCAATAGTATTGACATTAATGTTTCTGC
TTGCATATTCCTTTGCAACAGCTTTTGTCAGGCCAATAACACCTGCTTTT
GCAGCACTGTAATTGGCTTGGTCAATATTTCCAACCAGACCAACAACTGA
TGCTATATTGATTATTCTTCCCTTTTTCTTCTTCATCATGATTTTGGCTG
CTGCCTGCAAAGATAAATGGCCTCAGTTCCAATATACTTTAGCATCCATT
AGCATAACTAGTAAGATCATAGGAATGTGCACCTGTGTACACAGGAATAC
ACCTGTAAGATTCAGATCAATAACGTCCTGCCATTTGTGACCCT
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