CN186434

Overview
NameCN186434
Unique NameCN186434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:807..1561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT1_DICDI (Major actin OS=Dictyostelium discoideum GN=act1 PE=1 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 1.778e-73
Identity = 129/149 (86.58%), Postives = 144/149 (96.64%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            ++TA SSS++EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLSGG+TMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT10_DICDI (Actin-10 OS=Dictyostelium discoideum GN=act10 PE=1 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.778e-73
Identity = 129/149 (86.58%), Postives = 144/149 (96.64%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            ++TA SSS++EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLSGG+TMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTA_PHYPO (Actin, plasmodial isoform OS=Physarum polycephalum GN=ARDA PE=1 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 2.322e-73
Identity = 129/149 (86.58%), Postives = 143/149 (95.97%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            ++TA SSS++EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLYGN+VLSGG+TMFPGIADRM KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMQKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT1_MAIZE (Actin-1 OS=Zea mays GN=ACT1 PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.322e-73
Identity = 130/149 (87.25%), Postives = 141/149 (94.63%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            LETAKSSSSVEK+YE+PDGQ+ITIG+ERFRCPEVLFQPSL+GME+  +HE TYNSIMKCDVDIRKDLYGN+VLSGG TMFPGIADRMSKEIT+L PSSMK+KVVAPP RKYSVWIGGSILASLSTFQQMWISKGEYDE+GP IVH KCF
Sbjct:  227 LETAKSSSSVEKSYEMPDGQVITIGSERFRCPEVLFQPSLVGMESPSVHEATYNSIMKCDVDIRKDLYGNVVLSGGFTMFPGIADRMSKEITSLVPSSMKVKVVAPPRRKYSVWIGGSILASLSTFQQMWISKGEYDETGPGIVHMKCF 375
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT22_DICDI (Putative actin-22 OS=Dictyostelium discoideum GN=act22 PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.960e-73
Identity = 129/149 (86.58%), Postives = 144/149 (96.64%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            ++TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETT+NSIMKCDVDIRKDLYGN+VLSGG+TMFPGIADRM+KE+T+LAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MQTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTFNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTSLAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTC_BIOOB (Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 6.755e-73
Identity = 131/149 (87.92%), Postives = 140/149 (93.96%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            ++TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GMEAAGIHETTYNSIMKCDVDIRKDLY N VLSGGSTMFPGIADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MQTATSSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT_MESVI (Actin OS=Mesostigma viride PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 8.823e-73
Identity = 132/149 (88.59%), Postives = 140/149 (93.96%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            L TA +SSS+EK+YELPDGQ+ITIG ERFRCPEVLF P  +GME+AGIHETTYNSIM+CDVDIRKDLYGNIVLSGGSTM PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ MWI+K EYDESGPSIVHRKCF
Sbjct:  229 LATANTSSSIEKSYELPDGQVITIGNERFRCPEVLFNPGYVGMESAGIHETTYNSIMRCDVDIRKDLYGNIVLSGGSTMXPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQAMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT3_DICDI (Actin-3 OS=Dictyostelium discoideum GN=act3 PE=3 SV=3)

HSP 1 Score: 273.478 bits (698), Expect = 8.823e-73
Identity = 129/149 (86.58%), Postives = 142/149 (95.30%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            L+TA SSS++EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLY N+VLSGGSTMFPGIADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASL TFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 LQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYSNVVLSGGSTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLPTFQQMWISKEEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT1_SORBI (Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 8.823e-73
Identity = 133/149 (89.26%), Postives = 141/149 (94.63%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            +ETAK+SSSVEK+YELPDGQ+ITI A+RFRCPEVLFQPS IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRM +    LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  229 METAKTSSSVEKSYELPDGQVITIAADRFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMRQGNHCLAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTC_PISOC (Actin, cytoplasmic OS=Pisaster ochraceus PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.965e-72
Identity = 129/149 (86.58%), Postives = 140/149 (93.96%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            ++TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLY N VLSGGSTMFPGIADRM KE+TALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MQTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEVTALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of CN186434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ACT1_DICDI1.778e-7386.58Major actin OS=Dictyostelium discoideum GN=act1 PE... [more]
ACT10_DICDI1.778e-7386.58Actin-10 OS=Dictyostelium discoideum GN=act10 PE=1... [more]
ACTA_PHYPO2.322e-7386.58Actin, plasmodial isoform OS=Physarum polycephalum... [more]
ACT1_MAIZE2.322e-7387.25Actin-1 OS=Zea mays GN=ACT1 PE=3 SV=1[more]
ACT22_DICDI3.960e-7386.58Putative actin-22 OS=Dictyostelium discoideum GN=a... [more]
ACTC_BIOOB6.755e-7387.92Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 ... [more]
ACT_MESVI8.823e-7388.59Actin OS=Mesostigma viride PE=3 SV=1[more]
ACT3_DICDI8.823e-7386.58Actin-3 OS=Dictyostelium discoideum GN=act3 PE=3 S... [more]
ACT1_SORBI8.823e-7389.26Actin-1 OS=Sorghum bicolor GN=AC1 PE=2 SV=1[more]
ACTC_PISOC1.965e-7286.58Actin, cytoplasmic OS=Pisaster ochraceus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002O06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186434 ID=CN186434; Name=CN186434; organism=Citrus sinensis; type=EST; length=755bp
GCATCCAACCACTCTTCATCTCCAGCTACAAACACCCTTTTTAAAATAAA
AAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAA
GGCAAGGAAGATGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAA
GAAGCTTGTATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCC
CATCCTTAGCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGAC
ACAAAAAACCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAA
AGAACTTAGAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATA
CTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGA
TTGATCCTCCAATCCAAACACTGTATTTTCTCTCTGGTGGAGCCACGACC
TTGATCTTCATGCTGCTTGGAGCAAGTGCTGTGATTTCCTTGCTCATACG
GTCGGCAATACCAGGGAACATAGTTGAACCCCCACTGAGAACAATGTTAC
CATACAGATCCTTTCTAATATCCACATCACACTTCATGATGGAGTTGTAG
GTAGTCTCATGAATACCAGCAGCTTCCATTCCGATGAGAGATGGCTGGAA
CAGAACTTCTGGGCAACGGAATCTTTCAGCTCCAATGGTGATGATCTGGC
CATCAGGCAGCTCATAGTTCTTCTCAACAGATGAGCTGCTCTTGGCAGTC
TCAAG
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