CN186434

Overview
NameCN186434
Unique NameCN186434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ARP6_YARLI (Actin-like protein ARP6 OS=Yarrowia lipolytica GN=ARP6 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.530e-16
Identity = 50/159 (31.45%), Postives = 75/159 (47.17%), Query Frame = -1
Query:  336 LETAKSSSSVEKNYELPDG-------------------QIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESG 755
            L+ AK + S++  Y LPD                    Q + +G ERF  PE+LF PS+I ++ +G+ ET   SI     + R  L  NIV+ GG    PG   R+ K++  L PS   +K     +  ++   GG +L     F  + ++K EYDE G
Sbjct:  209 LDLAKKTKSLQVEYALPDYKTTKLGYVVDRKQHDISELQTLKLGNERFTMPEILFDPSIIDLQQSGLCETIAESIQASPKEFRSLLCSNIVIVGGCAKLPGFQSRLEKDLRPLIPSEYHMKTRLDDKPDFTTLQGGKVLVDQPGFSNLCVTKQEYDEYG 367          
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ARP6_DROME (Actin-like protein 13E OS=Drosophila melanogaster GN=Actr13E PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.530e-16
Identity = 38/121 (31.40%), Postives = 70/121 (57.85%), Query Frame = -1
Query:  336 QIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESG 698
            Q++++  ERF  PE+LF PS IG++  GI E   + +  C  +  ++L  NI++ GGS  FPG   R+ +++ AL P  +++ ++ P +     W GG  +A+   F++   ++ +Y+E G
Sbjct:  271 QMVSLCNERFTVPELLFNPSDIGVQQVGIPEAVADCLKACPWEAHRELLLNILIVGGSAQFPGFLPRLKRDLRALVPDDLEVSLICPEDPVRYAWYGGKEVATSPNFEEFVYTQDDYEEYG 391          
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ARP3_ACACA (Actin-related protein 3 OS=Acanthamoeba castellanii GN=ARP3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.609e-16
Identity = 47/139 (33.81%), Postives = 73/139 (52.52%), Query Frame = -1
Query:  327 ITIGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMK----------------IKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 692
            + +G ERF  PE+ F P +   +    + +    +I  C +D R+ LY NIVLSGGSTMF     R+ ++I       +K                +KV++   ++++VW GGS+LAS   F ++  +K +YDE GPSI
Sbjct:  277 VDVGYERFLGPEIFFNPEIFSSDFLTPLPKVVDETIQSCPIDTRRGLYKNIVLSGGSTMFKDFGKRLQRDIKRAVDYRIKRSEELSQGRIKSKAVDVKVISHHMQRFAVWFGGSMLASTPEFYKVCHTKQQYDEVGPSI 415          
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ARP5_ORYSJ (Actin-related protein 5 OS=Oryza sativa subsp. japonica GN=ARP5 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.591e-16
Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = -1
Query:  318 ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKC--DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHR 692
            I+IG ERFRCPE+LFQP +IG++ AGI E    S+ +   D  +++ L  +I+++GG ++ PG+  R+   I    P    +K+V   +     W G +  A+ S F +   S  +Y E G ++ HR
Sbjct:  442 ISIGIERFRCPEILFQPGMIGIDQAGIDEMVSISLRRLMEDEAVKERLCQSILVTGGCSLIPGMIPRLESGIRQFRPYLSPLKLVRAADPLIDAWRGAAAFAASSKFGRHTFSLADYREHGENLFHR 568          
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ARP5_ORYSI (Actin-related protein 5 OS=Oryza sativa subsp. indica GN=ARP5 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.591e-16
Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = -1
Query:  318 ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKC--DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHR 692
            I+IG ERFRCPE+LFQP +IG++ AGI E    S+ +   D  +++ L  +I+++GG ++ PG+  R+   I    P    +K+V   +     W G +  A+ S F +   S  +Y E G ++ HR
Sbjct:  442 ISIGIERFRCPEILFQPGMIGIDQAGIDEMVSISLRRLMEDEAVKERLCQSILVTGGCSLIPGMIPRLESGIRQFRPYLSPLKLVRAADPLIDAWRGAAAFAASSKFGRHTFSLADYREHGENLFHR 568          
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSJ (Actin-related protein 8 OS=Oryza sativa subsp. japonica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 49/152 (32.24%), Postives = 84/152 (55.26%), Query Frame = -1
Query:  321 AKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKC---DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS--SMKIKVVAPPERKYSVWIGGSILASLSTFQQMW-ISKGEYDE----SGPSIVH 746
            A+     + + E+      T+  ERF+  E+LFQP + G+ A G+H+     +  C   +V    + Y  +VLSGGS+  PG+++R+ KE+  L P+  S  I+V+ PP    S W G  +++++STF + W I K ++ +    +GPS V+
Sbjct:  331 AEKRKDTQASCEVDGEGWFTLSEERFKTAEILFQPQIGGVRAMGLHKAVSLCMDHCYNSEVFGDDNWYKTVVLSGGSSCLPGLSERLEKELRELLPAHISEGIRVIPPPFGTDSAWFGAKMISNVSTFTEAWCIKKKQFRQKTRRNGPSFVN 482          
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ARP8_ORYSI (Actin-related protein 8 OS=Oryza sativa subsp. indica GN=ARP8 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 49/152 (32.24%), Postives = 84/152 (55.26%), Query Frame = -1
Query:  321 AKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKC---DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS--SMKIKVVAPPERKYSVWIGGSILASLSTFQQMW-ISKGEYDE----SGPSIVH 746
            A+     + + E+      T+  ERF+  E+LFQP + G+ A G+H+     +  C   +V    + Y  +VLSGGS+  PG+++R+ KE+  L P+  S  I+V+ PP    S W G  +++++STF + W I K ++ +    +GPS V+
Sbjct:  331 AEKRKDTQASCEVDGEGWFTLSEERFKTAEILFQPQIGGVRAMGLHKAVSLCMDHCYNSEVFGDDNWYKTVVLSGGSSCLPGLSERLEKELRELLPAHISEGIRVIPPPFGTDSAWFGAKMISNVSTFTEAWCIKKKQFRQKTRRNGPSFVN 482          
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ARP3_DICDI (Actin-related protein 3 OS=Dictyostelium discoideum GN=arpC PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.295e-15
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = -1
Query:  327 IGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMK----------------IKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 686
            +G ERF  PE+ F P +   +    + +   ++I  C +D R+ LY NIVLSGGSTMF     R+ +++       +K                + V++   ++Y+VW GGS+LAS   F  +  +K +YDE GPSI
Sbjct:  271 VGYERFLGPELFFNPEIASSDYLTPLPKVVDDTIQSCPIDCRRGLYKNIVLSGGSTMFKDFGKRLQRDVKRSVDYRIKRSEELSGGKIKAVPLAVNVISHNMQRYAVWFGGSMLASTPEFYNVCHTKAQYDEIGPSI 407          
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ARP3_ORYSJ (Actin-related protein 3 OS=Oryza sativa subsp. japonica GN=ARP3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.209e-15
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = -1
Query:  327 IGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSM----------------KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 686
            IG ERF  PE+ F P +   +    +H      I    +D R+ LY NIVLSGGSTMF     R+ +++  +  + +                ++ VV+ P ++Y+VW GGS+LAS + F +   +K EY+E G SI
Sbjct:  281 IGYERFLGPEIFFHPEIYNNDFTTPLHVVIDKCIQSSPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASNARLGGDAKAQPIEVNVVSHPIQRYAVWFGGSVLASTAEFYEACHTKAEYEEYGASI 417          
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ARP3_ORYSI (Actin-related protein 3 OS=Oryza sativa subsp. indica GN=ARP3 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.209e-15
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = -1
Query:  327 IGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSM----------------KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 686
            IG ERF  PE+ F P +   +    +H      I    +D R+ LY NIVLSGGSTMF     R+ +++  +  + +                ++ VV+ P ++Y+VW GGS+LAS + F +   +K EY+E G SI
Sbjct:  281 IGYERFLGPEIFFHPEIYNNDFTTPLHVVIDKCIQSSPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASNARLGGDAKAQPIEVNVVSHPIQRYAVWFGGSVLASTAEFYEACHTKAEYEEYGASI 417          
The following BLAST results are available for this feature:
BLAST of CN186434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ARP6_YARLI1.530e-1631.45Actin-like protein ARP6 OS=Yarrowia lipolytica GN=... [more]
ARP6_DROME1.530e-1631.40Actin-like protein 13E OS=Drosophila melanogaster ... [more]
ARP3_ACACA2.609e-1633.81Actin-related protein 3 OS=Acanthamoeba castellani... [more]
ARP5_ORYSJ7.591e-1634.65Actin-related protein 5 OS=Oryza sativa subsp. jap... [more]
ARP5_ORYSI7.591e-1634.65Actin-related protein 5 OS=Oryza sativa subsp. ind... [more]
ARP8_ORYSJ9.914e-1632.24Actin-related protein 8 OS=Oryza sativa subsp. jap... [more]
ARP8_ORYSI9.914e-1632.24Actin-related protein 8 OS=Oryza sativa subsp. ind... [more]
ARP3_DICDI1.295e-1533.58Actin-related protein 3 OS=Dictyostelium discoideu... [more]
ARP3_ORYSJ2.209e-1534.31Actin-related protein 3 OS=Oryza sativa subsp. jap... [more]
ARP3_ORYSI2.209e-1534.31Actin-related protein 3 OS=Oryza sativa subsp. ind... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002O06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186434 ID=CN186434; Name=CN186434; organism=Citrus sinensis; type=EST; length=755bp
GCATCCAACCACTCTTCATCTCCAGCTACAAACACCCTTTTTAAAATAAA
AAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAA
GGCAAGGAAGATGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAA
GAAGCTTGTATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCC
CATCCTTAGCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGAC
ACAAAAAACCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAA
AGAACTTAGAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATA
CTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGA
TTGATCCTCCAATCCAAACACTGTATTTTCTCTCTGGTGGAGCCACGACC
TTGATCTTCATGCTGCTTGGAGCAAGTGCTGTGATTTCCTTGCTCATACG
GTCGGCAATACCAGGGAACATAGTTGAACCCCCACTGAGAACAATGTTAC
CATACAGATCCTTTCTAATATCCACATCACACTTCATGATGGAGTTGTAG
GTAGTCTCATGAATACCAGCAGCTTCCATTCCGATGAGAGATGGCTGGAA
CAGAACTTCTGGGCAACGGAATCTTTCAGCTCCAATGGTGATGATCTGGC
CATCAGGCAGCTCATAGTTCTTCTCAACAGATGAGCTGCTCTTGGCAGTC
TCAAG
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