CN186434

Overview
NameCN186434
Unique NameCN186434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:807..1561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT1_DROME (Actin-5C OS=Drosophila melanogaster GN=Act5C PE=1 SV=4)

HSP 1 Score: 270.781 bits (691), Expect = 5.719e-72
Identity = 129/149 (86.58%), Postives = 139/149 (93.29%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GMEA GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT_CHLRE (Actin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 7.469e-72
Identity = 130/149 (87.25%), Postives = 141/149 (94.63%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SSS++EK YELPDGQ+ITIG ERFRCPEVLF P++IGMEA GIH+TT+NSIMKCDVDIRKDLY NIVLSGG+TMFPGIADRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  229 MATALSSSALEKTYELPDGQMITIGNERFRCPEVLFNPNMIGMEAVGIHDTTFNSIMKCDVDIRKDLYNNIVLSGGTTMFPGIADRMSKEITALAPSAMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTB3_TAKRU (Actin, cytoplasmic 3 OS=Takifugu rubripes GN=actbc PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 7.469e-72
Identity = 128/149 (85.91%), Postives = 140/149 (93.96%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME++GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  227 MATASSSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT2_DROME (Actin-42A OS=Drosophila melanogaster GN=Act42A PE=1 SV=3)

HSP 1 Score: 270.396 bits (690), Expect = 7.469e-72
Identity = 130/149 (87.25%), Postives = 139/149 (93.29%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GMEA GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MATAASSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT1_LYTPI (Actin, cytoskeletal 1 OS=Lytechinus pictus PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 7.469e-72
Identity = 129/149 (86.58%), Postives = 139/149 (93.29%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            ++TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AGIHET YNSIMKCDVDIRKDLY N VLSGGSTMFPGIADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MQTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETCYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT_CRYNV (Actin OS=Cryptococcus neoformans var. grubii PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 9.754e-72
Identity = 127/149 (85.23%), Postives = 141/149 (94.63%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            L+TA  SS +EK+YELPDGQ+ITIG ERFRCPE LFQPSL+G+EAAGIHETTYNSIMKCD+DIRKDLYGNIV+SGG+TM+ GIADRM KEITALAPSSMK+K+V+PPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  227 LQTAAQSSQLEKSYELPDGQVITIGNERFRCPEALFQPSLLGLEAAGIHETTYNSIMKCDLDIRKDLYGNIVMSGGTTMYNGIADRMQKEITALAPSSMKVKIVSPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 375
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTC_HELTI (Actin, cytoplasmic OS=Helisoma trivolvis PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 9.754e-72
Identity = 127/149 (85.23%), Postives = 140/149 (93.96%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            ++TA +SSS+EK+YELPDGQ+ITIG ERFRCPE ++QPS +GME+AGIHETTYNSIMKCDVDIRKDLY N VLSGGSTMFPGIADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MQTASTSSSLEKSYELPDGQVITIGNERFRCPEAMYQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTC_HALRO (Actin, nonmuscle OS=Halocynthia roretzi GN=CA1 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 9.754e-72
Identity = 127/149 (85.23%), Postives = 139/149 (93.29%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            ++TA +SSS+EK+YELPDGQ+IT+G ERFRCPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLY N VLSGGSTMFPGIADRM KEI ALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MQTAATSSSIEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIVALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT3A_HELAM (Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=actA3a PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 9.754e-72
Identity = 129/149 (86.58%), Postives = 139/149 (93.29%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GMEA GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTM_APLCA (Actin, muscle OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.274e-71
Identity = 129/149 (86.58%), Postives = 140/149 (93.96%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQP L+GME+AGIHETTYNSIMKCDVDIRKDLY N VLSGG+TMFPGIADRM KEIT+LAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MATAASSSSLEKSYELPDGQVITIGNERFRCPESLFQPILLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITSLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of CN186434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ACT1_DROME5.719e-7286.58Actin-5C OS=Drosophila melanogaster GN=Act5C PE=1 ... [more]
ACT_CHLRE7.469e-7287.25Actin OS=Chlamydomonas reinhardtii PE=2 SV=1[more]
ACTB3_TAKRU7.469e-7285.91Actin, cytoplasmic 3 OS=Takifugu rubripes GN=actbc... [more]
ACT2_DROME7.469e-7287.25Actin-42A OS=Drosophila melanogaster GN=Act42A PE=... [more]
ACT1_LYTPI7.469e-7286.58Actin, cytoskeletal 1 OS=Lytechinus pictus PE=2 SV... [more]
ACT_CRYNV9.754e-7285.23Actin OS=Cryptococcus neoformans var. grubii PE=3 ... [more]
ACTC_HELTI9.754e-7285.23Actin, cytoplasmic OS=Helisoma trivolvis PE=3 SV=1[more]
ACTC_HALRO9.754e-7285.23Actin, nonmuscle OS=Halocynthia roretzi GN=CA1 PE=... [more]
ACT3A_HELAM9.754e-7286.58Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=... [more]
ACTM_APLCA1.274e-7186.58Actin, muscle OS=Aplysia californica PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002O06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186434 ID=CN186434; Name=CN186434; organism=Citrus sinensis; type=EST; length=755bp
GCATCCAACCACTCTTCATCTCCAGCTACAAACACCCTTTTTAAAATAAA
AAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAA
GGCAAGGAAGATGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAA
GAAGCTTGTATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCC
CATCCTTAGCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGAC
ACAAAAAACCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAA
AGAACTTAGAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATA
CTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGA
TTGATCCTCCAATCCAAACACTGTATTTTCTCTCTGGTGGAGCCACGACC
TTGATCTTCATGCTGCTTGGAGCAAGTGCTGTGATTTCCTTGCTCATACG
GTCGGCAATACCAGGGAACATAGTTGAACCCCCACTGAGAACAATGTTAC
CATACAGATCCTTTCTAATATCCACATCACACTTCATGATGGAGTTGTAG
GTAGTCTCATGAATACCAGCAGCTTCCATTCCGATGAGAGATGGCTGGAA
CAGAACTTCTGGGCAACGGAATCTTTCAGCTCCAATGGTGATGATCTGGC
CATCAGGCAGCTCATAGTTCTTCTCAACAGATGAGCTGCTCTTGGCAGTC
TCAAG
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