CN186434

Overview
NameCN186434
Unique NameCN186434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:807..1561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTA_CHICK (Actin, aortic smooth muscle OS=Gallus gallus GN=ACTA2 PE=1 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.274e-71
Identity = 128/149 (85.91%), Postives = 140/149 (93.96%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  229 MATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTA_BOVIN (Actin, aortic smooth muscle OS=Bos taurus GN=ACTA2 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.274e-71
Identity = 128/149 (85.91%), Postives = 140/149 (93.96%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  229 MATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT3_LIMPO (Actin-3 OS=Limulus polyphemus PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.274e-71
Identity = 127/149 (85.23%), Postives = 140/149 (93.96%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME++GIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESSGIHETTYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT_PUCGR (Actin OS=Puccinia graminis PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.664e-71
Identity = 125/149 (83.89%), Postives = 142/149 (95.30%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            ++TA  SS++EK+YELPDGQ+ITIG ERFRCPE LFQPSL+G+EA+GIHETTYNSIMKCD+DIRKDLYGN+V+SGG+TM+ GI+DRM KEITALAPSSMK+K+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  227 MQTASQSSALEKSYELPDGQVITIGNERFRCPEALFQPSLLGLEASGIHETTYNSIMKCDLDIRKDLYGNVVMSGGTTMYSGISDRMQKEITALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTSB_TAKRU (Actin, alpha skeletal muscle B OS=Takifugu rubripes GN=acta1b PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.664e-71
Identity = 128/147 (87.07%), Postives = 139/147 (94.56%), Query Frame = -1 
Query:  309 TAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 749
            TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  231 TAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTC_BRABE (Actin, cytoplasmic OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.664e-71
Identity = 127/149 (85.23%), Postives = 139/149 (93.29%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ G+HETTYNSIMKCD+DIRKDLY N VLSGG+TMFPGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  227 MATAASSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESTGVHETTYNSIMKCDIDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTB_ORYLA (Actin, cytoplasmic 1 OS=Oryzias latipes GN=actb PE=2 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.664e-71
Identity = 128/147 (87.07%), Postives = 138/147 (93.88%), Query Frame = -1 
Query:  309 TAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 749
            TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  229 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTB_OREMO (Actin, cytoplasmic 1 OS=Oreochromis mossambicus GN=actb PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.664e-71
Identity = 128/147 (87.07%), Postives = 138/147 (93.88%), Query Frame = -1 
Query:  309 TAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 749
            TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  229 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTB1_TAKRU (Actin, cytoplasmic 1 OS=Takifugu rubripes GN=actba PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.664e-71
Identity = 128/147 (87.07%), Postives = 138/147 (93.88%), Query Frame = -1 
Query:  309 TAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 749
            TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+ GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  229 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTA_STRPU (Actin, cytoskeletal 1A OS=Strongylocentrotus purpuratus GN=CYIA PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.664e-71
Identity = 128/149 (85.91%), Postives = 139/149 (93.29%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            ++TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQP+ +GME+AGIHET YNSIMKCDVDIRKDLY N VLSGGSTMFPGIADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MQTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMESAGIHETCYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of CN186434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ACTA_CHICK1.274e-7185.91Actin, aortic smooth muscle OS=Gallus gallus GN=AC... [more]
ACTA_BOVIN1.274e-7185.91Actin, aortic smooth muscle OS=Bos taurus GN=ACTA2... [more]
ACT3_LIMPO1.274e-7185.23Actin-3 OS=Limulus polyphemus PE=1 SV=1[more]
ACT_PUCGR1.664e-7183.89Actin OS=Puccinia graminis PE=3 SV=1[more]
ACTSB_TAKRU1.664e-7187.07Actin, alpha skeletal muscle B OS=Takifugu rubripe... [more]
ACTC_BRABE1.664e-7185.23Actin, cytoplasmic OS=Branchiostoma belcheri PE=2 ... [more]
ACTB_ORYLA1.664e-7187.07Actin, cytoplasmic 1 OS=Oryzias latipes GN=actb PE... [more]
ACTB_OREMO1.664e-7187.07Actin, cytoplasmic 1 OS=Oreochromis mossambicus GN... [more]
ACTB1_TAKRU1.664e-7187.07Actin, cytoplasmic 1 OS=Takifugu rubripes GN=actba... [more]
ACTA_STRPU1.664e-7185.91Actin, cytoskeletal 1A OS=Strongylocentrotus purpu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002O06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186434 ID=CN186434; Name=CN186434; organism=Citrus sinensis; type=EST; length=755bp
GCATCCAACCACTCTTCATCTCCAGCTACAAACACCCTTTTTAAAATAAA
AAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAA
GGCAAGGAAGATGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAA
GAAGCTTGTATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCC
CATCCTTAGCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGAC
ACAAAAAACCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAA
AGAACTTAGAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATA
CTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGA
TTGATCCTCCAATCCAAACACTGTATTTTCTCTCTGGTGGAGCCACGACC
TTGATCTTCATGCTGCTTGGAGCAAGTGCTGTGATTTCCTTGCTCATACG
GTCGGCAATACCAGGGAACATAGTTGAACCCCCACTGAGAACAATGTTAC
CATACAGATCCTTTCTAATATCCACATCACACTTCATGATGGAGTTGTAG
GTAGTCTCATGAATACCAGCAGCTTCCATTCCGATGAGAGATGGCTGGAA
CAGAACTTCTGGGCAACGGAATCTTTCAGCTCCAATGGTGATGATCTGGC
CATCAGGCAGCTCATAGTTCTTCTCAACAGATGAGCTGCTCTTGGCAGTC
TCAAG
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