CN186434

Overview
NameCN186434
Unique NameCN186434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:807..1561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT2_SCHMA (Actin-2 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.664e-71
Identity = 128/149 (85.91%), Postives = 139/149 (93.29%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SSSS+EK+YELPDGQ+ITIG ERFRCPE LFQPS +GME+AG+HETT+NSIMKCDVDIRKDLY N VLSGG+TMFPGIADRM KEITALAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGP IVHRKCF
Sbjct:  228 MATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGVHETTFNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT_VOLCA (Actin OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.173e-71
Identity = 130/149 (87.25%), Postives = 140/149 (93.96%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SSS++EK YELPDGQ ITIG ERFRCPEVL+ PSLIGMEA GIH+TT+NSIMKCDVDIRKDLY NIVLSGG+TMFPGIADRM+KEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  229 MATAASSSALEKTYELPDGQPITIGNERFRCPEVLYNPSLIGMEAVGIHDTTFNSIMKCDVDIRKDLYNNIVLSGGTTMFPGIADRMTKEITALAPSAMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT_CRAGI (Actin OS=Crassostrea gigas PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.173e-71
Identity = 127/149 (85.23%), Postives = 140/149 (93.96%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SSSS+EK+YELPDGQ+ITIG ERFRCPE +FQPS +GME++GIHET+YNSIMKCDVDIRKDLY NIVLSGG+TMFPGIADRM KE+TALAP +MKIKV+APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MTTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESSGIHETSYNSIMKCDVDIRKDLYANIVLSGGTTMFPGIADRMQKEVTALAPPTMKIKVIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTM_HELTB (Actin, cytoskeletal OS=Heliocidaris tuberculata PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.173e-71
Identity = 127/149 (85.23%), Postives = 140/149 (93.96%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA +SSS+EK+YELPDGQ+ITIG ERFRCPE LFQP+ IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG++M+PGIADRM KEITALAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MATAAASSSLEKSYELPDGQVITIGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDIDIRKDLYANTVLSGGTSMYPGIADRMQKEITALAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTM_HELER (Actin, cytoskeletal OS=Heliocidaris erythrogramma PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.173e-71
Identity = 127/149 (85.23%), Postives = 140/149 (93.96%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA +SSS+EK+YELPDGQ+ITIG ERFRCPE LFQP+ IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG++M+PGIADRM KEITALAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MATAAASSSLEKSYELPDGQVITIGNERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDIDIRKDLYANTVLSGGTSMYPGIADRMQKEITALAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT4_CAEEL (Actin-4 OS=Caenorhabditis elegans GN=act-4 PE=2 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 2.173e-71
Identity = 126/149 (84.56%), Postives = 140/149 (93.96%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SSSS+EK+YELPDGQ+IT+G ERFRCPE LFQPS +GME+AGIHET+YNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MATAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT2_CAEEL (Actin-2 OS=Caenorhabditis elegans GN=act-2 PE=2 SV=3)

HSP 1 Score: 268.855 bits (686), Expect = 2.173e-71
Identity = 126/149 (84.56%), Postives = 140/149 (93.96%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SSSS+EK+YELPDGQ+IT+G ERFRCPE LFQPS +GME+AGIHET+YNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  228 MATAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT1_SOYBN (Actin-1 OS=Glycine max GN=SAC1 PE=3 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 2.173e-71
Identity = 129/149 (86.58%), Postives = 142/149 (95.30%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            LET+++SSSVEK+YELPDGQ+ITIGAERF CP VL+QPS++GMEA+GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFP IADRMSKEI+ALAPSSMKIKVVAP ERK+ VWIGGSILASLSTFQQMWI K EYDESGPSIVH+KCF
Sbjct:  229 LETSETSSSVEKSYELPDGQVITIGAERFGCPGVLYQPSMVGMEASGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPSIADRMSKEISALAPSSMKIKVVAPSERKFGVWIGGSILASLSTFQQMWIXKAEYDESGPSIVHKKCF 377
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACT1_ONCVO (Actin-1 OS=Onchocerca volvulus GN=act-1a PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.173e-71
Identity = 125/149 (83.89%), Postives = 141/149 (94.63%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SSSS+EK+YELPDGQ+IT+G ERFRCPE LFQPS +GME+AGIHE+TYNSIMKCD+DIRKDLY NIVLSGG+TM+PGIADRM KE+TALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQ+WISK EYDESGPSIVHRKCF
Sbjct:  228 MATAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHESTYNSIMKCDIDIRKDLYANIVLSGGTTMYPGIADRMQKEVTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQVWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CN186434 vs. ExPASy Swiss-Prot
Match: ACTN_STYCL (Actin, muscle OS=Styela clava GN=TB12 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.838e-71
Identity = 127/149 (85.23%), Postives = 140/149 (93.96%), Query Frame = -1 
Query:  309 LETAKSSSSVEKNYELPDGQIITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 755
            + TA SS+S+EK+YELPDGQ+ITIG ERFRCPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  230 MATAASSTSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 378
The following BLAST results are available for this feature:
BLAST of CN186434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 479
Match NameE-valueIdentityDescription
ACT2_SCHMA1.664e-7185.91Actin-2 OS=Schistosoma mansoni PE=2 SV=1[more]
ACT_VOLCA2.173e-7187.25Actin OS=Volvox carteri PE=3 SV=1[more]
ACT_CRAGI2.173e-7185.23Actin OS=Crassostrea gigas PE=2 SV=1[more]
ACTM_HELTB2.173e-7185.23Actin, cytoskeletal OS=Heliocidaris tuberculata PE... [more]
ACTM_HELER2.173e-7185.23Actin, cytoskeletal OS=Heliocidaris erythrogramma ... [more]
ACT4_CAEEL2.173e-7184.56Actin-4 OS=Caenorhabditis elegans GN=act-4 PE=2 SV... [more]
ACT2_CAEEL2.173e-7184.56Actin-2 OS=Caenorhabditis elegans GN=act-2 PE=2 SV... [more]
ACT1_SOYBN2.173e-7186.58Actin-1 OS=Glycine max GN=SAC1 PE=3 SV=2[more]
ACT1_ONCVO2.173e-7183.89Actin-1 OS=Onchocerca volvulus GN=act-1a PE=3 SV=1[more]
ACTN_STYCL2.838e-7185.23Actin, muscle OS=Styela clava GN=TB12 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002O06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186434 ID=CN186434; Name=CN186434; organism=Citrus sinensis; type=EST; length=755bp
GCATCCAACCACTCTTCATCTCCAGCTACAAACACCCTTTTTAAAATAAA
AAAAAGGAAAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAA
GGCAAGGAAGATGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAA
GAAGCTTGTATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCC
CATCCTTAGCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGAC
ACAAAAAACCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAA
AGAACTTAGAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATA
CTCGCCCTTTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGA
TTGATCCTCCAATCCAAACACTGTATTTTCTCTCTGGTGGAGCCACGACC
TTGATCTTCATGCTGCTTGGAGCAAGTGCTGTGATTTCCTTGCTCATACG
GTCGGCAATACCAGGGAACATAGTTGAACCCCCACTGAGAACAATGTTAC
CATACAGATCCTTTCTAATATCCACATCACACTTCATGATGGAGTTGTAG
GTAGTCTCATGAATACCAGCAGCTTCCATTCCGATGAGAGATGGCTGGAA
CAGAACTTCTGGGCAACGGAATCTTTCAGCTCCAATGGTGATGATCTGGC
CATCAGGCAGCTCATAGTTCTTCTCAACAGATGAGCTGCTCTTGGCAGTC
TCAAG
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