CN186433

Overview
NameCN186433
Unique NameCN186433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.810e-20
Identity = 61/191 (31.94%), Postives = 104/191 (54.45%), Query Frame = 1
Query:   34 RKHVNLD-LIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 600
            RK +++    +VE   GG +ED+ ++ G+ ++KD++HP+M + I+N +I +L    E  K +++  ++I   E F  + Q E++Y   + +    +   +VI + G  D A H LM  N+ A+R V   +   IA A G RIV R +EL  + +G  AGL+  K  G   +   +I  C + +A TI +RG
Sbjct:  190 RKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIG--DEYFTFITDCKDPKACTILLRG 378          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: THSG_SULSH (Thermosome subunit gamma OS=Sulfolobus shibatae GN=thsC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.364e-20
Identity = 64/204 (31.37%), Postives = 109/204 (53.43%), Query Frame = 1
Query:    7 AVLAVADLERKHVNLDL--IKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGRIM 612
            A LAV D      +LD+  IK+    GG  +D+EL+ GI VDK+ ++  MPKR EN K+ +   P +  K +   K+ I    + +    ++  Y   MV K K +G  L I Q   D+ A++L+    + A++ V   ++EL++ ATG +I    ++     LG+A LV  ++ G  +++ L+I+    ++AVT+ I+G   M
Sbjct:  175 ASLAVLDKRDGTYDLDIKNIKIVKVNGGEFDDSELVNGIVVDKEPTNENMPKRAENVKVMLADFPLKLEKTEISMKLGISDPTQIKGYLDEQTAYVKQMVDKIKAMGVKLFITQKDIDEVASYLMGKSGIIALKNVKRSDIELLSRATGAKIASSMKDANESDLGEAKLVEVRNLG--KNKYLFIQ-SDKAKAVTVIIKGSNNM 375          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.364e-20
Identity = 61/191 (31.94%), Postives = 104/191 (54.45%), Query Frame = 1
Query:   34 RKHVNLD-LIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 600
            RK +++    +VE   GG +ED+ ++ G+ ++KD++HP+M + I+N +I +L    E  K +++  ++I   E F  + Q E++Y   + +    +   +VI + G  D A H LM  N+ A+R V   +   IA A G RIV R +EL  + +G  AGL+  K  G   +   +I  C + +A TI +RG
Sbjct:  190 RKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIG--DEYFTFITDCKDPKACTILLRG 378          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.532e-19
Identity = 57/182 (31.32%), Postives = 94/182 (51.65%), Query Frame = 1
Query:   61 KVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGG 603
            KVE   GG + D  ++ G+  +KD++H +M +RIEN +I +L  P E  K +++  V+I   E + TL + E++Y ++M  +       +VI + G  D A H     N+ A R +   +   +A ATG  IV R  E+    +G   GL   +  G  ++   + E C + +A TI +RGG
Sbjct:  215 KVEKIPGGEISDCAVLSGVMFNKDVTHSKMRRRIENPRILLLDTPLEYKKGESQTNVEITDEEDWNTLLKMEEEYVENMCMEIIAFKPDIVITEKGVSDLAQHYFAKANITAFRRLRKTDNNRVARATGATIVSRTDEIRESDIGTGCGLFEMRKIG--EEYFAFFEECKDPKACTIILRGG 394          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPG_YEAST (T-complex protein 1 subunit gamma OS=Saccharomyces cerevisiae GN=CCT3 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.457e-19
Identity = 55/183 (30.05%), Postives = 98/183 (53.55%), Query Frame = 1
Query:   58 IKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLG-KAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGG 603
            ++VE   GG + D+ ++ G+ ++KD+ HP+M + IEN ++ +L CP E  K +++  ++I+  E +  + Q E++    M ++   V  TLVI + G  D A H L+      +R V   +   IA  TG  IV R ++L    +G   GL + +  G   +   ++++C   +A TI +RGG
Sbjct:  204 VRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIG--DEYFSFLDNCKEPKACTIMLRGG 384          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPG_DROME (T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.928e-18
Identity = 62/202 (30.69%), Postives = 103/202 (50.99%), Query Frame = 1
Query:    7 AVLAVADLERKHVNLDL---IKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 600
            AV  V   E   + +D+    KVE   GG +E++ ++ G+ ++KD++HP+M + IEN +I +L C  E  K +++  V+I   + F  + Q E+++   +      V   LV  + G  D A H L+   + A+R +   +   IA A G  IV R +ELT + +G  AGL   K  G   +   ++  C   +A TI +RG
Sbjct:  181 AVETVTLSENGRLEVDIKRYAKVEKIPGGAIEESCVLKGVMINKDVTHPKMRRLIENPRIVLLDCSLEYKKGESQTNVEIIGEQDFTRMLQIEEEFVQRICADIIAVKPDLVFTEKGVSDLAQHYLLKAGITAIRRLRKTDNLRIARACGATIVNRTEELTEKDVGTGAGLFEVKKIG--DEYFTFVTECKEPKACTILLRG 380          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPW_HUMAN (T-complex protein 1 subunit zeta-2 OS=Homo sapiens GN=CCT6B PE=1 SV=4)

HSP 1 Score: 90.8929 bits (224), Expect = 8.406e-18
Identity = 60/193 (31.09%), Postives = 101/193 (52.33%), Query Frame = 1
Query:   49 LDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDV---------GATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 600
            +++++++ K+G    DT+LI G+ +D    HP M KR+E+A I I     E  K +        T E+ + L + E+K+ +D VQK  D+            +VI Q G D  +   L    + A+R      +E +++A GG  V  F++LT + LG AGLV E + G  +++  +IE C N  +VT+ ++G
Sbjct:  191 VEIMEMKHKLG---TDTKLIQGLVLDHGARHPDMKKRVEDAFILICNVSLEYEKTEVNSGFFYKTAEEKEKLVKAERKFIEDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDSLAKHGIVALRRAKRRNMERLSLACGGMAVNSFEDLTVDCLGHAGLVYEYTLG--EEKFTFIEECVNPCSVTLLVKG 378          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPW_MOUSE (T-complex protein 1 subunit zeta-2 OS=Mus musculus GN=Cct6b PE=2 SV=4)

HSP 1 Score: 90.1225 bits (222), Expect = 1.434e-17
Identity = 66/206 (32.04%), Postives = 105/206 (50.97%), Query Frame = 1
Query:   16 AVADLERKHVNLDLIKVE-GKVGGRLE-DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDV---------GATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 600
            +V  + R  V +DL  VE  ++  + E DT+LI G+ +D    HP+M K++ +A I       E  K +        TVE+ + L + E+K+ +D VQK  D+            +VI Q G D  +  +L   N+ A+R      LE + +A GG  V  F+ L+ E LG AGLV E + G  +++  +IE C N  +VT+ ++G
Sbjct:  175 SVLAIRRPGVPIDLFMVEIVEMRHKSETDTQLIRGLVLDHGARHPRMRKQVRDAYILTCNVSLEYEKTEVSSGFFYKTVEEKEKLVKAERKFIEDRVQKIIDLKQKVCAESNKGFVVINQKGIDPVSLEMLAKHNIVALRRAKRRNLERLTLACGGLAVNSFEGLSEECLGHAGLVFEYALG--EEKFTFIEDCVNPLSVTLLVKG 378          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.434e-17
Identity = 60/202 (29.70%), Postives = 101/202 (50.00%), Query Frame = 1
Query:    7 AVLAVADLERKHVNLDL---IKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 600
            AV  VA      + +D+    +VE   GG +E + ++ G+ ++KD++HP+M +RIEN +I +L CP E  K +++  ++I     +  + + E++    M      V   LVI + G  D A H L+  N+ A+R     +   IA A G  IV R ++L  + +G   GL      G   +   ++  C N +A TI +RG
Sbjct:  177 AVRTVASTSNGRMEIDIKRYARVEKVPGGEIESSCVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEYRKGESQTNIEISKDTDWNRILEIEEEQVKRMCDYIIAVKPDLVITEKGVSDLAQHYLLKANITALRRTRKSDNNRIARACGANIVNRLEDLREKDVGTGCGLFYIDKLG--DEYYTFLTGCKNPKACTILLRG 376          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPG_DICDI (T-complex protein 1 subunit gamma OS=Dictyostelium discoideum GN=cct3 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.116e-17
Identity = 54/181 (29.83%), Postives = 89/181 (49.17%), Query Frame = 1
Query:   61 KVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGK-AGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 600
            KVE   GG + D  +I G+ ++KD++HP+M + I+N +I +L C  E  K ++   VDI   + F  L + E++Y   + +    +   LV  + G  D A H  + + +  +R +   E   IA  +G  IV R  EL    +G   GL   +  G   +   ++E C   +A TI +RG
Sbjct:  199 KVEKIPGGDISDCRVIRGVMLNKDVTHPKMKRMIKNPRIVLLDCSLEYKKGESDTMVDITNEDDFSALLKIEEEYVQRICEDIIKLKPDLVFTEKGVSDLAQHFFVKKGITCLRRLKKSENNRIARISGATIVSRTDELQESDIGTGCGLFEIRKIG--DEYFTFLEDCKEPKACTILLRG 377          
The following BLAST results are available for this feature:
BLAST of CN186433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
TCPG_RAT1.810e-2031.94T-complex protein 1 subunit gamma OS=Rattus norveg... [more]
THSG_SULSH2.364e-2031.37Thermosome subunit gamma OS=Sulfolobus shibatae GN... [more]
TCPG_MOUSE2.364e-2031.94T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPG_THAWE1.532e-1931.32T-complex protein 1 subunit gamma OS=Thalassiosira... [more]
TCPG_YEAST4.457e-1930.05T-complex protein 1 subunit gamma OS=Saccharomyces... [more]
TCPG_DROME4.928e-1830.69T-complex protein 1 subunit gamma OS=Drosophila me... [more]
TCPW_HUMAN8.406e-1831.09T-complex protein 1 subunit zeta-2 OS=Homo sapiens... [more]
TCPW_MOUSE1.434e-1732.04T-complex protein 1 subunit zeta-2 OS=Mus musculus... [more]
TCPG_SCHPO1.434e-1729.70T-complex protein 1 subunit gamma OS=Schizosacchar... [more]
TCPG_DICDI7.116e-1729.83T-complex protein 1 subunit gamma OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002O05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186433 ID=CN186433; Name=CN186433; organism=Citrus sinensis; type=EST; length=769bp
CTTTAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGGAAGCATGTCAATTT
AGATTTGATTAAAGTTGAGGGAAAAGTAGGGGGAAGGTTGGAGGACACTG
AGCTAATATATGGAATTACTGTTGACAAGGATATGAGCCACCCTCAGATG
CCAAAACGAATTGAAAATGCAAAAATTGCCATCTTGACCTGCCCCTTTGA
GCCCCCTAAGCCAAAAACAAAGCATAAGGTGGACATTGATACCGTGGAAA
AGTTCCAGACTTTACGTCAGCAAGAGCAAAAATACTTTGATGACATGGTT
CAAAAGTGCAAGGATGTTGGTGCTACCTTGGTCATCTGTCAATGGGGTTT
CGATGATGAGGCTAATCACTTATTAATGCACAGGAACCTGCCTGCTGTCC
GCTGGGTTGGTGGTGTAGAATTGGAGCTGATTGCCATAGCCACAGGTGGA
AGAATTGTTCCAAGGTTTCAGGAGTTGACACCAGAAAAACTTGGAAAGGC
TGGTTTGGTTCGAGAAAAGTCTTTTGGTACTACACAAGATAGAATGCTGT
ACATTGAACACTGTGCAAATTCTAGGGCTGTAACCATTTTTATCCGTGGA
GGTAGGATCATGTTCCCTTGTTATATTATTAAATTCAAAATAATCTTTGT
TGGTTTATTATGTAGGGAAATGTTATGGGCTAATGGAAGTGCTGAAGAAG
AAAATAAATAGCCTTGAGAGAAGGATCCTTAAGTATTTAGATGGTCTCAC
TCAGAGTGATGGTGTTTTA
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