CN186433

Overview
NameCN186433
Unique NameCN186433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.585e-16
Identity = 51/187 (27.27%), Postives = 89/187 (47.59%), Query Frame = 1
Query:   43 VNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANS-RAVTIFIRG 600
            V+L+ + +E + G    ++EL+ G  +DKD  H  MP + + A + +L  P E  +      V I++ ++ Q    QE+      V +  D GA +V CQ G DD A H L  + + AVR     ++  +   TG  +V     +    LG+A + R+++       + Y+E   +    VT+ +RG
Sbjct:  198 VDLENVSIETQTGRSASESELLTGAVIDKDPVHDDMPVQFDEADVLLLNEPVEVEETDIDTNVSIESPDQLQKFLDQEEAQLKQKVDQIVDSGADVVFCQKGIDDLAQHYLAKQGILAVRRTKKSDIRFLKNITGAAVVSDLDSIEAAVLGRASVRRDEA-----GELFYVEGIGDDVHGVTLLLRG 379          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPZ_PONAB (T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 2.071e-16
Identity = 57/178 (32.02%), Postives = 90/178 (50.56%), Query Frame = 1
Query:   94 DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQK--------CKDVG-ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 600
            DT LI G+ +D    HP M KR+E+A I       E  K +        + E+ + L + E+K+ +D V+K        C D     +VI Q G D  +   L    + A+R      +E + +A GG  +  F +L+P++LG AGLV E + G  +++  +IE C N R+VT+ I+G
Sbjct:  203 DTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKRKVCGDSDKGFVVINQKGIDPFSLDALSKEGIVALRRAKRRNMERLTLACGGVALNSFDDLSPDQLGHAGLVYEYTLG--EEKFTFIEKCNNPRSVTLLIKG 378          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPZ_MOUSE (T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 2.071e-16
Identity = 63/206 (30.58%), Postives = 102/206 (49.51%), Query Frame = 1
Query:   16 AVADLERKHVNLDLIKVE-GKVGGRLE-DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQK--------CKDVG-ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 600
            ++  + +K   +DL  VE  ++  + E DT LI G+ +D    HP M KR+ENA I       E  K +        + E+ + L + E+K+ +D V+K        C D     +VI Q G D  +   L    + A+R      +E + +A GG  +  F +L P+ LG AGLV E + G  +++  +IE C N R+VT+ ++G
Sbjct:  175 SILAIRKKDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGIALNSFDDLNPDCLGHAGLVYEYTLG--EEKFTFIEKCNNPRSVTLLVKG 378          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPZ_CHICK (T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.704e-16
Identity = 57/178 (32.02%), Postives = 88/178 (49.44%), Query Frame = 1
Query:   94 DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDV---------GATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 600
            DT LI G+ +D    HP M KR+E+A I       E  K +        + E+ + L + E+K+ +D V K  D+            +VI Q G D  +   L    + A+R      +E + +A GG  +   ++LTP+ LG AGLV E + G  +++  +IE C N R+VT+ IRG
Sbjct:  202 DTTLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVSAGFFYKSAEEREKLVKAERKFIEDRVSKIIDLKRRVCGDSDKGFIVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGTAMNSVEDLTPDCLGHAGLVYEYTLG--EEKYTFIEKCDNPRSVTLLIRG 377          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.532e-16
Identity = 61/211 (28.91%), Postives = 111/211 (52.61%), Query Frame = 1
Query:    7 AVLAVADLERKHVNLDL--IKVEGKVGGRLEDTELIYGITVDKD-MSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGF-----DDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANS-RAVTIFIRGGRIM 612
            AVL V D  R   N+DL  I++  K+GG ++DTELI G+ + +  +     P RIE A IA++     PPKP  +++V ++   +   + ++E++Y  +M +K K  GA +++ Q        +D A H L    +  ++ +   E+E I  +TG + +   +    +KLG A LV E S  ++ ++++      N+ + V+I  RG  ++
Sbjct:  177 AVLKVID-PRVATNVDLKDIRIVKKLGGIIDDTELIPGLALTQTAVKSAGGPTRIEKANIALIQFQLSPPKPDMENQVVVNDYRQMDKILKEERQYLLNMCKKIKKAGANVILIQKSILRDAVNDLALHFLAKLKIMVIKDIERDEVEFICKSTGCKPIADIESFAEDKLGHADLVEETS--SSGEKIVKFSGVKNAGKTVSILCRGANLL 384          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.613e-16
Identity = 48/182 (26.37%), Postives = 87/182 (47.80%), Query Frame = 1
Query:   58 IKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIE-HCANSRAVTIFIRG 600
            I +E + G  + +++L+ G  + KD  H QMP  +E+A + +L    E  + +    V+I++ ++ Q+   QE+K   + VQ+  D GA +V CQ G DD A H L    + AVR     ++E +       +V      +   +    + R+     + D + Y+E     +  VT+ +RG
Sbjct:  204 INIETQTGHGVNESQLLRGAAISKDPVHDQMPAAVEDADVLLLNEAIEVEEAEADTSVNIESPDQLQSFLDQEEKQLKEKVQQIADTGANVVFCQKGIDDMAQHYLAKEGILAVRRTKKSDIEFLTNVLDASVVTDLDAASEADVVAGSVTRD-----SDDELFYVEGESEQAHGVTLLLRG 380          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPZ_HUMAN (T-complex protein 1 subunit zeta OS=Homo sapiens GN=CCT6A PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 6.024e-16
Identity = 57/178 (32.02%), Postives = 89/178 (50.00%), Query Frame = 1
Query:   94 DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQK--------CKDVG-ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 600
            DT LI G+ +D    HP M KR+E+A I       E  K +        + E+ + L + E+K+ +D V+K        C D     +VI Q G D  +   L    + A+R      +E + +A GG  +  F +L+P+ LG AGLV E + G  +++  +IE C N R+VT+ I+G
Sbjct:  203 DTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIELKRKVCGDSDKGFVVINQKGIDPFSLDALSKEGIVALRRAKRRNMERLTLACGGVALNSFDDLSPDCLGHAGLVYEYTLG--EEKFTFIEKCNNPRSVTLLIKG 378          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.024e-16
Identity = 62/204 (30.39%), Postives = 101/204 (49.51%), Query Frame = 1
Query:    7 AVLAVADLERKHVNLDL---IKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKF-QTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANH-LLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLG-KAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 600
            AV +V   E  +V +D+    KVE   GG LE++ ++ G+  +KD++HP M + IEN ++ +L CP E  K ++   ++    E F + L  +E++      +    V   +VI + G  D A H LL + N   +R +   +   IA  TG  I  R +EL    +G K GL   K  G   +   ++  C N +A +I +RG
Sbjct:  179 AVKSVYKKEGDYVEIDVKRYAKVEKIPGGLLEESVVLDGVMFNKDVTHPGMRRYIENPRVVLLDCPLEYKKGESMTNMEFTKEEDFKKALMMEEEEVKKMCAEDILRVKPDVVITEKGVSDTAQHFLLKYGNCTVIRRIRKTDNNRIARVTGATIANRPEELQESDVGTKCGLFEIKKIG--DEYFSFMTKCENPKACSILLRG 380          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPG_ENCCU (T-complex protein 1 subunit gamma OS=Encephalitozoon cuniculi GN=CCT3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.024e-16
Identity = 49/182 (26.92%), Postives = 93/182 (51.10%), Query Frame = 1
Query:   58 IKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLG-KAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 600
            +KVE  +GG L ++E++ G+ ++KD+ HPQM + IEN +I I+  P E  K +++   +      F    + E++   +M ++   V   +V+C+ G  D A  +L   N+  +R +   ++  ++   G R V R ++L    +G   GL     +G  ++       CA+ +A ++ IRG
Sbjct:  194 MKVEKVLGGNLMESEVVDGVLINKDIIHPQMRRVIENPRIVIIESPLEYKKGESQTNYEFSKENDFTRALEIEEEQVREMCERIIGVRPDIVVCEKGISDLALSILFENNITGLRRLKKTDISRLSKVCGARSVSRPEDLEERHVGVSCGLFEYIKYG--EEYYCKFSRCAHPKACSVVIRG 373          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPW_BOVIN (T-complex protein 1 subunit zeta-2 OS=Bos taurus GN=CCT6B PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.342e-15
Identity = 62/206 (30.10%), Postives = 104/206 (50.49%), Query Frame = 1
Query:   16 AVADLERKHVNLDLIKVE-GKVGGRLE-DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDV---------GATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 600
            +V  + R +  +DL  VE  ++  + E DT+LI G+ +D    HP M KR+++A I       E  K +        T E+ + L + E+K+ +D VQK  D+            +VI Q G D  +   L    + A+R      +E +++A GG  V   ++L+ + LG AGLV E + G  +++  +IE C N R+VT+ ++G
Sbjct:  175 SVLAIRRPNYPIDLFMVEIMEMKHKSETDTKLIKGLVLDHGARHPDMKKRVDDAFILTCNVSLEYEKTEVSSGFFYKTAEEKEKLVKAERKFIEDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFSLDALAKHGILALRRAKRRNMERLSLACGGVAVNSVEDLSVDCLGHAGLVYEYTLG--EEKYTFIEDCINPRSVTLLVKG 378          
The following BLAST results are available for this feature:
BLAST of CN186433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
THS2_HALVO1.585e-1627.27Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
TCPZ_PONAB2.071e-1632.02T-complex protein 1 subunit zeta OS=Pongo abelii G... [more]
TCPZ_MOUSE2.071e-1630.58T-complex protein 1 subunit zeta OS=Mus musculus G... [more]
TCPZ_CHICK2.704e-1632.02T-complex protein 1 subunit zeta OS=Gallus gallus ... [more]
TCPD_SCHPO3.532e-1628.91T-complex protein 1 subunit delta OS=Schizosacchar... [more]
THSB_HALSA4.613e-1626.37Thermosome subunit beta OS=Halobacterium salinariu... [more]
TCPZ_HUMAN6.024e-1632.02T-complex protein 1 subunit zeta OS=Homo sapiens G... [more]
TCPG_OXYGR6.024e-1630.39T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
TCPG_ENCCU6.024e-1626.92T-complex protein 1 subunit gamma OS=Encephalitozo... [more]
TCPW_BOVIN1.342e-1530.10T-complex protein 1 subunit zeta-2 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002O05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186433 ID=CN186433; Name=CN186433; organism=Citrus sinensis; type=EST; length=769bp
CTTTAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGGAAGCATGTCAATTT
AGATTTGATTAAAGTTGAGGGAAAAGTAGGGGGAAGGTTGGAGGACACTG
AGCTAATATATGGAATTACTGTTGACAAGGATATGAGCCACCCTCAGATG
CCAAAACGAATTGAAAATGCAAAAATTGCCATCTTGACCTGCCCCTTTGA
GCCCCCTAAGCCAAAAACAAAGCATAAGGTGGACATTGATACCGTGGAAA
AGTTCCAGACTTTACGTCAGCAAGAGCAAAAATACTTTGATGACATGGTT
CAAAAGTGCAAGGATGTTGGTGCTACCTTGGTCATCTGTCAATGGGGTTT
CGATGATGAGGCTAATCACTTATTAATGCACAGGAACCTGCCTGCTGTCC
GCTGGGTTGGTGGTGTAGAATTGGAGCTGATTGCCATAGCCACAGGTGGA
AGAATTGTTCCAAGGTTTCAGGAGTTGACACCAGAAAAACTTGGAAAGGC
TGGTTTGGTTCGAGAAAAGTCTTTTGGTACTACACAAGATAGAATGCTGT
ACATTGAACACTGTGCAAATTCTAGGGCTGTAACCATTTTTATCCGTGGA
GGTAGGATCATGTTCCCTTGTTATATTATTAAATTCAAAATAATCTTTGT
TGGTTTATTATGTAGGGAAATGTTATGGGCTAATGGAAGTGCTGAAGAAG
AAAATAAATAGCCTTGAGAGAAGGATCCTTAAGTATTTAGATGGTCTCAC
TCAGAGTGATGGTGTTTTA
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