CN186433

Overview
NameCN186433
Unique NameCN186433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPD_KLULA (T-complex protein 1 subunit delta OS=Kluyveromyces lactis GN=CCT4 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.531e-14
Identity = 52/208 (25.00%), Postives = 109/208 (52.40%), Query Frame = 1
Query:   10 VLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKD-MSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGF-----DDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVRE-KSFGTTQDRMLYIEHCANSRAVTIFIRGGRIM 612
            VL++A  +  +V+L+ I++  KVGG ++DTE++ G+ + ++ +     P RIE A+I ++     PPKP T++ + ++   +   + ++E+ Y  ++ +K K     +++ Q        +D A H L    +  VR +   E+E ++ + G + +   +  T ++LG A +V E +S G+    +  ++    +  V++ IRG   M
Sbjct:  180 VLSIASHDSTNVDLNDIRLIKKVGGTIDDTEMVNGVVLTQNAVKTAGGPTRIEKARIGLIQFQISPPKPDTENNIVVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLGIMVVRDIERDEVEFLSKSLGCKPISDVELFTEDRLGSADVVEEVESDGSNIVTITGVKTTNKNPTVSVVIRGANNM 387          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPZ_YEAST (T-complex protein 1 subunit zeta OS=Saccharomyces cerevisiae GN=CCT6 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.306e-14
Identity = 52/208 (25.00%), Postives = 101/208 (48.56%), Query Frame = 1
Query:    7 AVLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDV----------GATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 600
            AVL+V D +  +++L ++++        +DT  I G+ +D    HP MP R++NA + IL    E  K +        + ++   L   E+K+ D  ++K  D+             ++I Q G D  +  +    N+ A+R      +E + + TGG      ++L+P+ LG +GLV +++ G  +++  Y+    + ++ TI I+G
Sbjct:  177 AVLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIG--EEKFTYVTENTDPKSCTILIKG 382          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPD_DEBHA (T-complex protein 1 subunit delta OS=Debaryomyces hansenii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.317e-14
Identity = 47/176 (26.70%), Postives = 95/176 (53.98%), Query Frame = 1
Query:    7 AVLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQM-PKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGF-----DDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVRE 516
            +VL V + E  +V+L+ I++  KVGG +++TEL+ G+ + +++      P R++ AKIA++     PPKP  ++ V ++   +   + ++E+ Y  ++ +K K     +++ Q        +D A H L   N+  ++ +   E+E ++ ATG + +      T ++LG A +V E
Sbjct:  182 SVLKVMNEEHTNVDLNDIRLIKKVGGTIDETELVNGVVLTQNVVKTAGGPVRVDKAKIALIQFQLSPPKPDMENNVVVNDYRQMDKILKEERAYLLNICKKIKKSKCNVLLIQKSILRDAVNDLALHFLSKLNIMVIKDIERDEIEFLSKATGCKPIADIDNFTEDRLGSADVVEE 357          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.364e-14
Identity = 51/194 (26.29%), Postives = 87/194 (44.85%), Query Frame = 1
Query:   43 VNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHP---QMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGRIMF 615
            + L +I ++   GG LE+++L+ G+   K  S+      PK+ +N KIA+L    E    K   ++ + TVE +Q +   E     D ++K    GA +++ +    D A      R++     V   +L+   +A GG I      L P+ LG   +  E   G   +R  +   C  ++  TI +RGG   F
Sbjct:  190 LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHQSGAKVILSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALVPDVLGHCQVFEETQIG--GERYNFFTGCPKAKTCTIILRGGAEQF 381          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPD_CANGA (T-complex protein 1 subunit delta OS=Candida glabrata GN=CCT4 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.364e-14
Identity = 56/212 (26.42%), Postives = 104/212 (49.06%), Query Frame = 1
Query:    7 AVLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGI----TVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGF-----DDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVRE-KSFGTTQDRMLYIEHCANSRAVTIFIRGGRIM 612
            AVL++ + + K V+L+ I++  KVGG + DTE++ G+    TV K    P M    E AKI ++     PPKP T++ + +    +   + ++E+ Y  ++ +K K     +++ Q        +D A H L    +  ++ +   E+E ++ + G + +   +  T ++LG A LV E  S GT   +   ++       V++ IRG   M
Sbjct:  178 AVLSITEKDSKTVDLNDIRLVKKVGGTIGDTEMVDGVVLTQTVVKTAGGPTMK---EKAKIGLIQFQISPPKPDTENNIVVSDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLAKLGIMVIKDIEREEIEFLSKSLGCKPISDVELFTEDRLGSADLVEEIDSDGTKIVKFSGVKGVNAKPTVSVIIRGANSM 386          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPZ_CAEEL (T-complex protein 1 subunit zeta OS=Caenorhabditis elegans GN=cct-6 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.256e-13
Identity = 52/182 (28.57%), Postives = 85/182 (46.70%), Query Frame = 1
Query:   94 DTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATL-------------VICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRG 600
            DT L+ G+ +D    HP MP+ +++A I       E  K +    +   T ++ + L   E+++    V K  ++   +             VI Q G D  +  LL    + A+R      +E + +A GG  V    +LTPE LG AGLV E S G  +++  +IE C   ++VT+ I+G
Sbjct:  203 DTTLVRGLVLDHGARHPDMPRHVKDAYILTCNVSLEYEKTEVNSGLFYKTAKEREALLAAEREFITRRVHKIIELKKKVIDNSPDGKNKGFVVINQKGIDPPSLDLLASEGILALRRAKRRNMERLQLAVGGEAVNSVDDLTPEDLGWAGLVYEHSLG--EEKYTFIEECRAPKSVTLLIKG 382          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.256e-13
Identity = 55/206 (26.70%), Postives = 92/206 (44.66%), Query Frame = 1
Query:    7 AVLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHP---QMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGRIMF 615
            AV+ + DL    + L +I ++   GG LED++L+ G+   K  S+      PK+  N KIA+L    E    K   ++ + TVE +Q +   E     D ++K    GA +V+ +    D A      R++     V   +L+   +A GG I      L+ + LG+  +  E   G   +R  +   C  ++  T  +RGG   F
Sbjct:  182 AVMMLDDL----LQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIG--GERYNFFTGCPKAKTCTFILRGGAEQF 381          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.641e-13
Identity = 54/206 (26.21%), Postives = 92/206 (44.66%), Query Frame = 1
Query:    7 AVLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHP---QMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGRIMF 615
            AV+ + DL    + L +I ++   GG LED++L+ G+   K  S+      PK+  N K+A+L    E    K   ++ + TVE +Q +   E     D ++K    GA +V+ +    D A      R++     V   +L+   +A GG I      L+ + LG+  +  E   G   +R  +   C  ++  T  +RGG   F
Sbjct:  182 AVMMLDDL----LQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKVALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGRCQVFEETQIG--GERYNFFTGCPKAKTCTFILRGGAEQF 381          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPH_TETTH (T-complex protein 1 subunit eta (Fragment) OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.143e-13
Identity = 52/205 (25.37%), Postives = 93/205 (45.37%), Query Frame = 1
Query:   10 VLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHP---QMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGRIMF 615
            V AV  LE   ++ DLI ++   GG + D+ L+ G+   K  S+    Q PK+  N KI +L    E    K   ++ I+  + ++++   E +   + ++K  + GA +V+ +    D A      RN+     V   +++ +  +TG  +      LT + LG      E   G   +R    + C +S++ TI +RGG   F
Sbjct:  121 VQAVETLETNLLDKDLIGIKMVTGGSVTDSFLVSGVAFKKTFSYAGFEQQPKKFNNPKICLLNIELELKAEKENAEIRIENPDDYKSIVDAEWELIYEKLRKIVESGANIVLSKLPIGDLATQYFADRNIFCAGRVDAEDMKRVQKSTGAIVQTTVNGLTEDVLGTCNQFEEVQIGA--ERYNLFKDCPHSKSATIILRGGAEQF 323          
BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.773e-13
Identity = 52/203 (25.62%), Postives = 89/203 (43.84%), Query Frame = 1
Query:   16 AVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHP---QMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGRIMF 615
            AV  L+++ +N ++I ++   GG +ED+ L+ G+   K  S+    Q PK  +N KI  L    E    K   +V +D V+++Q +   E +     ++     GA +V+ +    D A      R++     V   +L  +  A GG I      +  + LG      E+  G   DR    E C  ++  T+ +RGG   F
Sbjct:  186 AVLTLDQEDLNENMIGIKKVPGGAMEDSLLVKGVAFKKTFSYAGFEQQPKFFKNPKILCLDVELELKAEKDNAEVRVDKVQEYQNIVDAEWRIIFSKLEAIVATGAKVVLSKLPIGDLATQYFADRDIFCAGRVAADDLNRVVQAVGGSIQSTCSNIEEKHLGTCDTFEERQIGG--DRFNLFEGCPKAKTCTLILRGGADQF 386          
The following BLAST results are available for this feature:
BLAST of CN186433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
TCPD_KLULA2.531e-1425.00T-complex protein 1 subunit delta OS=Kluyveromyces... [more]
TCPZ_YEAST3.306e-1425.00T-complex protein 1 subunit zeta OS=Saccharomyces ... [more]
TCPD_DEBHA4.317e-1426.70T-complex protein 1 subunit delta OS=Debaryomyces ... [more]
TCPH_MOUSE7.364e-1426.29T-complex protein 1 subunit eta OS=Mus musculus GN... [more]
TCPD_CANGA7.364e-1426.42T-complex protein 1 subunit delta OS=Candida glabr... [more]
TCPZ_CAEEL1.256e-1328.57T-complex protein 1 subunit zeta OS=Caenorhabditis... [more]
TCPH_HUMAN1.256e-1326.70T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]
TCPH_PONAB1.641e-1326.21T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPH_TETTH2.143e-1325.37T-complex protein 1 subunit eta (Fragment) OS=Tetr... [more]
TCPH_SCHPO4.773e-1325.62Probable T-complex protein 1 subunit eta OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002O05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186433 ID=CN186433; Name=CN186433; organism=Citrus sinensis; type=EST; length=769bp
CTTTAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGGAAGCATGTCAATTT
AGATTTGATTAAAGTTGAGGGAAAAGTAGGGGGAAGGTTGGAGGACACTG
AGCTAATATATGGAATTACTGTTGACAAGGATATGAGCCACCCTCAGATG
CCAAAACGAATTGAAAATGCAAAAATTGCCATCTTGACCTGCCCCTTTGA
GCCCCCTAAGCCAAAAACAAAGCATAAGGTGGACATTGATACCGTGGAAA
AGTTCCAGACTTTACGTCAGCAAGAGCAAAAATACTTTGATGACATGGTT
CAAAAGTGCAAGGATGTTGGTGCTACCTTGGTCATCTGTCAATGGGGTTT
CGATGATGAGGCTAATCACTTATTAATGCACAGGAACCTGCCTGCTGTCC
GCTGGGTTGGTGGTGTAGAATTGGAGCTGATTGCCATAGCCACAGGTGGA
AGAATTGTTCCAAGGTTTCAGGAGTTGACACCAGAAAAACTTGGAAAGGC
TGGTTTGGTTCGAGAAAAGTCTTTTGGTACTACACAAGATAGAATGCTGT
ACATTGAACACTGTGCAAATTCTAGGGCTGTAACCATTTTTATCCGTGGA
GGTAGGATCATGTTCCCTTGTTATATTATTAAATTCAAAATAATCTTTGT
TGGTTTATTATGTAGGGAAATGTTATGGGCTAATGGAAGTGCTGAAGAAG
AAAATAAATAGCCTTGAGAGAAGGATCCTTAAGTATTTAGATGGTCTCAC
TCAGAGTGATGGTGTTTTA
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