CN186432

Overview
NameCN186432
Unique NameCN186432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPZ_CHICK (T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.454e-11
Identity = 43/144 (29.86%), Postives = 71/144 (49.31%), Query Frame = -3
Query:  203 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 634
            NK  + + K ++ D L   +N I +  ++ G GA E+A + A+        G  Q  ++AFADAL  IP  LA+NSG  P ETL  V+ +   E+    G+D N           +++    K+Q +   T +   IL +D+++
Sbjct:  379 NKHTLTQIKDAVRDGLRAVKNAIEDGCVIPGAGALEVAVANALVKHKPNVKGRAQLGVQAFADALLIIPKVLAQNSGYDPQETLVKVQAEH-AESGQLTGVDLNTGEPMVAAAAGIWDNYNVKKQLLHSCTVIASNILLVDEIM 521          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPZ_PONAB (T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.512e-11
Identity = 45/144 (31.25%), Postives = 71/144 (49.31%), Query Frame = -3
Query:  203 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 634
            NK  + + K ++ D L   RN I +  +V G GA E+A + A+        G  Q  ++AFADAL  IP  LA+NSG    ETL  ++ +   E+    G+D N        E  V++    K+Q +   T +   IL +D+++
Sbjct:  380 NKHTLTQIKDAVRDGLRAVRNAIDDGCVVPGAGAVEVAMAEALIKHKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKIQAEH-SESGQLVGVDLNTGEPMVAAEVGVWDNYCVKKQLLHSCTVIATNILLVDEIM 522          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPZ_BOVIN (T-complex protein 1 subunit zeta OS=Bos taurus GN=CCT6A PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 45/144 (31.25%), Postives = 71/144 (49.31%), Query Frame = -3
Query:  203 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 634
            NK  + + K +I D L   +N I +  +V G GA E+A + A+        G  Q  ++AFADAL  IP  LA+NSG    ETL  V+ +   E+    G+D N        E  +++    K+Q +   T +   IL +D+++
Sbjct:  380 NKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEH-SESGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIM 522          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPQ_CANAL (T-complex protein 1 subunit theta OS=Candida albicans GN=CCT8 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 44/140 (31.43%), Postives = 70/140 (50.00%), Query Frame = -3
Query:  203 IEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 622
            +++ +R+I D +   + LI++N ++ G GA EI     + A     PG+ Q AI++FA A + IP  LAE SG    E LS +      +     GI   D+ + ++ +  V + L  K+  I LA      IL ID +I
Sbjct:  382 LDDIERAIDDGVNSIKGLIKDNRLLPGAGAVEIELMKRITAYQST-PGLLQLAIKSFAKAFEVIPRVLAETSGHDSSEILSKLHAAHAEDTGLRAGI---DIDSGEVADTAVLDILATKKSAIDLAVDATNTILSIDQII 517          
The following BLAST results are available for this feature:
BLAST of CN186432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
TCPZ_CHICK3.454e-1129.86T-complex protein 1 subunit zeta OS=Gallus gallus ... [more]
TCPZ_PONAB4.512e-1131.25T-complex protein 1 subunit zeta OS=Pongo abelii G... [more]
TCPZ_BOVIN5.892e-1131.25T-complex protein 1 subunit zeta OS=Bos taurus GN=... [more]
TCPQ_CANAL5.892e-1131.43T-complex protein 1 subunit theta OS=Candida albic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002O05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186432 ID=CN186432; Name=CN186432; organism=Citrus sinensis; type=EST; length=780bp
CAGCAAATCATCAATTCTCACTACCAGAAAAAGTAACTCACCCTTTTAAT
TTTAACAAAAACCAACCCATAACCATTAAAGTCAGTCTTTATCAAGTGGA
CAGGGTCGATACCAAGCCAACAAAATACATGAAACGCATTCTTGGTGAAG
CAAAATCAAACAGAAACTTAGACCTTAGAATGAATCAATATTCAGAGGGG
GAAATGACATCATCAATTTTCAAAATCATCTTCACAACTTGTGTTGCGAG
AAGAATCTGCTGCTGCTTCCCAATCAAAGTCTCAAAGACATTTTGCTCAC
GCATGTCATTGGTTCCAACATCATTGCAGTCTATTCCGCAGTTTGGATTA
TTCTCCCTAATTTGCTGATTTTTCACAGCCGATAGCGTCTCAATAGGTTG
GAGACCACTATTTTCTGCAAGTGCCATTGGGATAGCATCCAACGCATCTG
CAAATGCCCTGATAGCATACTGTTCAACTCCCGGATATCTATCTGCAGCT
GCATCTACAGCAATTGAGCAAGCTATCTCAGCTGCACCCCCGCCATACAC
AATAGAATTGTTGCGAATCAGATTCCTAGCCACACACAAGGCATCATGTA
TGCTCCGCTTGGTCTCCTCTATCATCATTTTGTTACCTAACACATCATAA
AACACCATCACTCTGAGTGAGACCATCTAAATACTTAAGGATCCTTCTCT
CAAGGCTATTTATTTTCTTCTTCAGCACTTCCATTAGCCCATAACATTTC
CCTACATAATAAACCAACAAAGATTATTTT
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