CN186432

Overview
NameCN186432
Unique NameCN186432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.234e-18
Identity = 55/146 (37.67%), Postives = 86/146 (58.90%), Query Frame = -3
Query:  200 GNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 637
            G + +I+E +R++ DA+ V ++++ + +++  GGA EI  +I +D  A +  G E  AI  FADAL  IP  LAEN+GL  +E L  V ++  +      GID  +    DM E+ + E L  K+Q I  A++   MIL+IDDVI+
Sbjct:  379 GTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH-KNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIA 523          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.234e-18
Identity = 55/146 (37.67%), Postives = 86/146 (58.90%), Query Frame = -3
Query:  200 GNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 637
            G + +I+E +R++ DA+ V ++++ + +++  GGA EI  +I +D  A +  G E  AI  FADAL  IP  LAEN+GL  +E L  V ++  +      GID  +    DM E+ + E L  K+Q I  A++   MIL+IDDVI+
Sbjct:  379 GTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH-KNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIA 523          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPQ_PONAB (T-complex protein 1 subunit theta OS=Pongo abelii GN=CCT8 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.234e-18
Identity = 51/143 (35.66%), Postives = 83/143 (58.04%), Query Frame = -3
Query:  203 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGID--CNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 625
            ++++ +R++ D +   + L R+  +V GGGA EI  +  + +  +  PG+EQYAI+ FA+A +AIP ALAENSG++  E +S +     +E N N G+D         DM E  + +T +GK   I LAT     +L++D +I
Sbjct:  384 LMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVH-QEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQII 525          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPQ_MACFA (T-complex protein 1 subunit theta OS=Macaca fascicularis GN=CCT8 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.234e-18
Identity = 51/143 (35.66%), Postives = 83/143 (58.04%), Query Frame = -3
Query:  203 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGID--CNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 625
            ++++ +R++ D +   + L R+  +V GGGA EI  +  + +  +  PG+EQYAI+ FA+A +AIP ALAENSG++  E +S +     +E N N G+D         DM E  + +T +GK   I LAT     +L++D +I
Sbjct:  384 LMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVH-QEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQII 525          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPQ_HUMAN (T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4)

HSP 1 Score: 92.8189 bits (229), Expect = 2.234e-18
Identity = 51/143 (35.66%), Postives = 83/143 (58.04%), Query Frame = -3
Query:  203 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGID--CNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 625
            ++++ +R++ D +   + L R+  +V GGGA EI  +  + +  +  PG+EQYAI+ FA+A +AIP ALAENSG++  E +S +     +E N N G+D         DM E  + +T +GK   I LAT     +L++D +I
Sbjct:  384 LMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVH-QEGNKNVGLDIEAEVPAVKDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQII 525          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.918e-18
Identity = 47/145 (32.41%), Postives = 83/145 (57.24%), Query Frame = -3
Query:  191 MIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 625
            +++E +R + DAL V+   + +  ++ GGGA E+  +  +   AD   G EQ A+ AFAD+L+ +P  LAEN+GL  I+TL  +++    +++ + G++       D  E  V E    K+Q +  A++   ++LKIDD+IS  +
Sbjct:  385 VVDELERGVSDALDVSAQTLSDGRVLPGGGATEVEVASRLRDFADSVSGREQLAVEAFADSLELVPRVLAENAGLDSIDTLVDLRSAHENDDDEHIGLNVLSGDLEDTFEAGVVEPAHAKEQAVTSASEAANLVLKIDDIISAGD 529          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.918e-18
Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = -3
Query:  200 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGID-CNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 634
            N M ++E +RSI+DAL   RN++    IV GGGA E   ++ +   A    G EQ AI  FA+AL+ IPM LAE +G++PI+TL  ++ +  +    N G+D  N    +DM   NV E +  K Q +  A +    ILKIDD+I+
Sbjct:  386 NDMALDEAERSINDALHSLRNVLMKPMIVAGGGAVETELALRLREYARSVGGKEQLAIEKFAEALEEIPMILAETAGMEPIQTLMDLRAKHAK-GLINAGVDVMNGKIADDMLALNVLEPVRVKAQVLKSAVEAATAILKIDDLIA 530          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPQ_CAEEL (T-complex protein 1 subunit theta OS=Caenorhabditis elegans GN=Y55F3AR.3 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.918e-18
Identity = 49/140 (35.00%), Postives = 81/140 (57.86%), Query Frame = -3
Query:  203 IEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 622
            I++ +R++ DA+   + L ++  ++ G GA EI  +  +++   + PG+EQYAI+ FA AL+ +P A+AEN+G+   ETL+ +  + +     N GID     T D    N+F+   GK+  I LAT     ILK+D +I
Sbjct:  418 IDDVERAVDDAVNTYKALTKDGKLLAGAGAVEIELAKEIESFGAKAPGLEQYAIKKFAHALETLPKAIAENAGMPTTETLTKLYAEHV-AGKKNAGIDIWKRETMDAVVNNIFDLYAGKRLAIKLATDAASTILKVDQII 556          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.918e-18
Identity = 49/146 (33.56%), Postives = 86/146 (58.90%), Query Frame = -3
Query:  200 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNP-NCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 634
            +K ++ E +R++HDAL VARN++ N  +V GGGA E+  +  +   + +  G++Q+  +A A AL+ IP  LA+N G   +  ++ ++ +   +      GID N     DMRE NV++ +  KQQ +  + +   M+L+IDD++S
Sbjct:  382 SKDVLNEIERNLHDALGVARNVMVNPKLVPGGGAIEMELACRLMEFSQKIEGMQQWPFKALAGALEVIPRTLAQNCGADVVRVMTELRAKHANDKEGLYWGIDGNTGKIRDMRESNVWDPISVKQQTLKTSIEATCMLLRIDDIVS 527          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: THSA_SULAC (Thermosome subunit alpha OS=Sulfolobus acidocaldarius GN=thsA PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.810e-18
Identity = 57/148 (38.51%), Postives = 85/148 (57.43%), Query Frame = -3
Query:  194 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDC-NDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPS 634
            N M ++E +RS++DAL   RN++    IV GGGA E   ++ +   A    G EQ AI  FA+AL+ IPM LAE +G++PI+ L  ++ +  +    N GID  N    +DM + NV E +  K Q +  A +    ILKIDD+++ S
Sbjct:  386 NDMALDEAERSLNDALHSLRNVLMKPMIVAGGGAVESELALRLREYARSVGGKEQLAIEKFAEALEEIPMILAETAGMEPIQALMDLRARHAK-GLVNSGIDAVNGKIADDMMKINVIEPVRVKSQVLKSAVEAATAILKIDDLVAAS 532          
The following BLAST results are available for this feature:
BLAST of CN186432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
THSA_THEK12.234e-1837.67Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO2.234e-1837.67Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
TCPQ_PONAB2.234e-1835.66T-complex protein 1 subunit theta OS=Pongo abelii ... [more]
TCPQ_MACFA2.234e-1835.66T-complex protein 1 subunit theta OS=Macaca fascic... [more]
TCPQ_HUMAN2.234e-1835.66T-complex protein 1 subunit theta OS=Homo sapiens ... [more]
THSB_HALSA2.918e-1832.41Thermosome subunit beta OS=Halobacterium salinariu... [more]
THSA_SULTO2.918e-1839.73Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
TCPQ_CAEEL2.918e-1835.00T-complex protein 1 subunit theta OS=Caenorhabditi... [more]
TCPG_OXYGR2.918e-1833.56T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
THSA_SULAC3.810e-1838.51Thermosome subunit alpha OS=Sulfolobus acidocaldar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002O05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186432 ID=CN186432; Name=CN186432; organism=Citrus sinensis; type=EST; length=780bp
CAGCAAATCATCAATTCTCACTACCAGAAAAAGTAACTCACCCTTTTAAT
TTTAACAAAAACCAACCCATAACCATTAAAGTCAGTCTTTATCAAGTGGA
CAGGGTCGATACCAAGCCAACAAAATACATGAAACGCATTCTTGGTGAAG
CAAAATCAAACAGAAACTTAGACCTTAGAATGAATCAATATTCAGAGGGG
GAAATGACATCATCAATTTTCAAAATCATCTTCACAACTTGTGTTGCGAG
AAGAATCTGCTGCTGCTTCCCAATCAAAGTCTCAAAGACATTTTGCTCAC
GCATGTCATTGGTTCCAACATCATTGCAGTCTATTCCGCAGTTTGGATTA
TTCTCCCTAATTTGCTGATTTTTCACAGCCGATAGCGTCTCAATAGGTTG
GAGACCACTATTTTCTGCAAGTGCCATTGGGATAGCATCCAACGCATCTG
CAAATGCCCTGATAGCATACTGTTCAACTCCCGGATATCTATCTGCAGCT
GCATCTACAGCAATTGAGCAAGCTATCTCAGCTGCACCCCCGCCATACAC
AATAGAATTGTTGCGAATCAGATTCCTAGCCACACACAAGGCATCATGTA
TGCTCCGCTTGGTCTCCTCTATCATCATTTTGTTACCTAACACATCATAA
AACACCATCACTCTGAGTGAGACCATCTAAATACTTAAGGATCCTTCTCT
CAAGGCTATTTATTTTCTTCTTCAGCACTTCCATTAGCCCATAACATTTC
CCTACATAATAAACCAACAAAGATTATTTT
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