CN186432

Overview
NameCN186432
Unique NameCN186432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.226e-17
Identity = 47/145 (32.41%), Postives = 84/145 (57.93%), Query Frame = -3
Query:  200 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 634
            +K ++ E +R++ DA+ V RN++ +  +V GGGA+E+A + A+   +    GVEQ+  RA A AL+ IP  L +N G   I  L++++ +  +EN    G++       D++E  ++E L  K Q    A +   ++L+IDD++S
Sbjct:  380 SKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDVKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVS 524          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.213e-17
Identity = 56/148 (37.84%), Postives = 86/148 (58.11%), Query Frame = -3
Query:  200 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVG---TNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 634
            N M ++E +RSI+DAL   RN++    I+ GGGA E+  ++ +   A    G EQ AI AFADAL+ IP+ LAE +GL+ I +L  ++ +  +    N G+D   +G    +D+   N+ E +  K Q +  AT+    ILKIDD+I+
Sbjct:  385 NDMALDEAERSINDALHALRNILLEPVILPGGGAIELELAMKLREYARSVGGKEQLAIEAFADALEEIPLILAETAGLEAISSLMDLRARHAK-GLSNTGVDV--IGGKIVDDVYALNIIEPIRVKSQVLKSATEAATAILKIDDLIA 529          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.213e-17
Identity = 47/145 (32.41%), Postives = 84/145 (57.93%), Query Frame = -3
Query:  200 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 634
            +K ++ E +R++ DA+ V RN++ +  +V GGGA+E+A + A+   +    GVEQ+  RA A AL+ IP  L +N G   I  L++++ +  +E+    G++       DM+E  ++E L  K Q    A +   ++L+IDD++S
Sbjct:  380 SKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVS 524          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPD_YARLI (T-complex protein 1 subunit delta OS=Yarrowia lipolytica GN=CCT4 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.213e-17
Identity = 49/143 (34.27%), Postives = 81/143 (56.64%), Query Frame = -3
Query:  206 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDV 634
            N ++I+ET+RS+HDALCV R+L R  ++V GGGA E+  +  +   +    G        F++A+  IP  LAEN+GL P+  ++ ++ +   +   N GI     GT+ M E++V +  +     I LA +  K +L+IDD+
Sbjct:  383 NDLVIDETERSLHDALCVLRSLFRVPALVPGGGACEVQVAQVIGKESRAMDGASAICYEEFSNAMLVIPTTLAENAGLNPVNVVTELRVRH-EKGEVNAGISVRR-GTSIMVEEHVIQPALVTTSAITLAAECAKGLLRIDDI 523          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: THSB_SULAC (Thermosome subunit beta OS=Sulfolobus acidocaldarius GN=thsB PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.502e-17
Identity = 51/146 (34.93%), Postives = 80/146 (54.79%), Query Frame = -3
Query:  200 GNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 637
            G + +++ET+R++ DAL    +++R+   + GGGA E   +  +   A +  G EQ AI A+A+AL+++ M L EN G  PIE L  +++    E N   GI+       DM    V E  + K   I  AT+   +IL+IDD+IS
Sbjct:  386 GLERVVDETERALRDALGTVADVVRDGRAIAGGGAVETEIAKRLRKYAPQVGGKEQLAIEAYANALESLVMILIENGGFDPIELLVKLRSAHENETNKWHGINVYTGQIQDMWSLGVIEPAVVKMNAIKAATEASTLILRIDDLIS 531          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: THSA_AERPE (Thermosome subunit alpha OS=Aeropyrum pernix GN=thsA PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.502e-17
Identity = 53/146 (36.30%), Postives = 87/146 (59.59%), Query Frame = -3
Query:  200 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVG-TNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 634
            N M+++E +R+I DAL   RN++R   IV GGGA E+  ++ +   A    G +Q AI A+A+AL+ IP  LAE++G+  +E L  +++    +     G++  +     DM + NV+E ++ K+Q I  A++    ILKIDDVI+
Sbjct:  382 NDMLLDEAERNIKDALHGLRNILREPKIVGGGGAVEVELALKLKEFARTVGGKQQLAIEAYAEALETIPTVLAESAGMDALEALLKLRSLH-SQGYKFAGVNVLEGKIEEDMTKINVYEPVLVKKQVIKSASEAAISILKIDDVIA 526          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.502e-17
Identity = 51/145 (35.17%), Postives = 81/145 (55.86%), Query Frame = -3
Query:  200 NKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 634
            +K +I E +R++ DA+ VARN+  +  +  GGGA E+A S+ +   A    GV Q+  RA ADA++ IP  L +N G  PI+ L+ ++ +   E   + GID       DM E  V+E    K Q I  A +   ++L++DD++S
Sbjct:  378 SKDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEGVAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAKH-AEGQHSFGIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVS 521          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 5.502e-17
Identity = 45/143 (31.47%), Postives = 81/143 (56.64%), Query Frame = -3
Query:  203 KMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 631
            + +++E +RS+HDALCV    +++   VYGGG +E+  + AV   A R PG E  A+ +FA AL  +P  +A+N+G    + ++ ++     E     G+D  +    DM    + E+   K+Q +L A +  ++IL++D++I
Sbjct:  380 QQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTMLASRTPGKEAVAMESFAKALRMLPTIIADNAGYDSADLVAQLRAAH-SEGRITAGLDMKEGSIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNII 521          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 88.1965 bits (217), Expect = 5.502e-17
Identity = 45/143 (31.47%), Postives = 83/143 (58.04%), Query Frame = -3
Query:  203 KMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 631
            + +++E +RS+HDALCV    +++   VYGGG +E+  + AV   A+R PG E  A+ +FA AL  +P  +A+N+G    + ++ ++     E +   G+D  +    DM    + E+   K+Q +L A +  ++IL++D++I
Sbjct:  380 QQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLMAHAVTQLANRTPGKEAVAMESFAKALRMLPTIIADNAGYDSADLVAQLRAAH-SEGHITAGLDMKEGTIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVDNII 521          
BLAST of CN186432 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 5.502e-17
Identity = 44/143 (30.77%), Postives = 82/143 (57.34%), Query Frame = -3
Query:  203 KMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 631
            + +++E +RS+HDALCV    ++++  VYGGG +E+  + AV   A R PG E  A+ ++A AL  +P  +A+N+G    + ++ ++     E     G+D  +    DM    + E+   K+Q +L A +  ++IL++D++I
Sbjct:  380 QQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAH-SEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNII 521          
The following BLAST results are available for this feature:
BLAST of CN186432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 134
Match NameE-valueIdentityDescription
TCPG_MACFA3.226e-1732.41T-complex protein 1 subunit gamma OS=Macaca fascic... [more]
THSA_SULSO4.213e-1737.84Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
TCPG_MOUSE4.213e-1732.41T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPD_YARLI4.213e-1734.27T-complex protein 1 subunit delta OS=Yarrowia lipo... [more]
THSB_SULAC5.502e-1734.93Thermosome subunit beta OS=Sulfolobus acidocaldari... [more]
THSA_AERPE5.502e-1736.30Thermosome subunit alpha OS=Aeropyrum pernix GN=th... [more]
TCPG_SCHPO5.502e-1735.17T-complex protein 1 subunit gamma OS=Schizosacchar... [more]
TCPB_RAT5.502e-1731.47T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPB_MOUSE5.502e-1731.47T-complex protein 1 subunit beta OS=Mus musculus G... [more]
TCPB_BOVIN5.502e-1730.77T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002O05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186432 ID=CN186432; Name=CN186432; organism=Citrus sinensis; type=EST; length=780bp
CAGCAAATCATCAATTCTCACTACCAGAAAAAGTAACTCACCCTTTTAAT
TTTAACAAAAACCAACCCATAACCATTAAAGTCAGTCTTTATCAAGTGGA
CAGGGTCGATACCAAGCCAACAAAATACATGAAACGCATTCTTGGTGAAG
CAAAATCAAACAGAAACTTAGACCTTAGAATGAATCAATATTCAGAGGGG
GAAATGACATCATCAATTTTCAAAATCATCTTCACAACTTGTGTTGCGAG
AAGAATCTGCTGCTGCTTCCCAATCAAAGTCTCAAAGACATTTTGCTCAC
GCATGTCATTGGTTCCAACATCATTGCAGTCTATTCCGCAGTTTGGATTA
TTCTCCCTAATTTGCTGATTTTTCACAGCCGATAGCGTCTCAATAGGTTG
GAGACCACTATTTTCTGCAAGTGCCATTGGGATAGCATCCAACGCATCTG
CAAATGCCCTGATAGCATACTGTTCAACTCCCGGATATCTATCTGCAGCT
GCATCTACAGCAATTGAGCAAGCTATCTCAGCTGCACCCCCGCCATACAC
AATAGAATTGTTGCGAATCAGATTCCTAGCCACACACAAGGCATCATGTA
TGCTCCGCTTGGTCTCCTCTATCATCATTTTGTTACCTAACACATCATAA
AACACCATCACTCTGAGTGAGACCATCTAAATACTTAAGGATCCTTCTCT
CAAGGCTATTTATTTTCTTCTTCAGCACTTCCATTAGCCCATAACATTTC
CCTACATAATAAACCAACAAAGATTATTTT
back to top