CN186429

Overview
NameCN186429
Unique NameCN186429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2572 contig Csv1_Contig2572:33..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186429 vs. ExPASy Swiss-Prot
Match: RL14_SCHPO (60S ribosomal protein L14 OS=Schizosaccharomyces pombe GN=rpl14 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.258e-20
Identity = 55/130 (42.31%), Postives = 79/130 (60.77%), Query Frame = -3
Query:  215 FKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKK 598
            FKRYVE+GRV LV  G+  GKL VIVD++D  RAL+D+P  +  R  + +  + LT I + + R  R   + +  +  DV NKW +S+W +KL  +K R+ LNDFDRF +M  K ++   V   +AK  K
Sbjct:    4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKALK 133          
BLAST of CN186429 vs. ExPASy Swiss-Prot
Match: RL14B_YEAST (60S ribosomal protein L14-B OS=Saccharomyces cerevisiae GN=RPL14B PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.049e-17
Identity = 47/125 (37.60%), Postives = 76/125 (60.80%), Query Frame = -3
Query:  224 RYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPD--MVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAK 592
            R VE+GRV L+  G+  GKL  IV+++DQ + L+D P   + R  +N  ++ LT +   + R  R  ++ +    A V  KW  SSW +K+  ++RRAAL DF+RF++M+ + +K   V++ LAK
Sbjct:   13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAGVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137          
BLAST of CN186429 vs. ExPASy Swiss-Prot
Match: RL14A_YEAST (60S ribosomal protein L14-A OS=Saccharomyces cerevisiae GN=RPL14A PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.370e-17
Identity = 47/125 (37.60%), Postives = 76/125 (60.80%), Query Frame = -3
Query:  224 RYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPD--MVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAK 592
            R VE+GRV L+  G+  GKL  IV+++DQ + L+D P   + R  +N  ++ LT +   + R  R  ++ +    A V  KW  SSW +K+  ++RRAAL DF+RF++M+ + +K   V++ LAK
Sbjct:   13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137          
BLAST of CN186429 vs. ExPASy Swiss-Prot
Match: RL14_DROME (60S ribosomal protein L14 OS=Drosophila melanogaster GN=RpL14 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.789e-17
Identity = 52/136 (38.24%), Postives = 76/136 (55.88%), Query Frame = -3
Query:  203 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKKENAA 604
            MPF+R+V+ GR+A  + G   G+LV IVDV+DQNR LVD P   + R +     L LT  +I        + + +A  ++D+  +W+ S W  K     +R++LNDFDRFKL  AK ++  L+      LKK   A
Sbjct:    1 MPFERFVQTGRIAKASAGPLKGRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWTESDLKAQWKVSPWSVKAQNICKRSSLNDFDRFKLRYAKRQRNKLLTIAFNTLKKRTKA 136          
BLAST of CN186429 vs. ExPASy Swiss-Prot
Match: RL14_DICDI (60S ribosomal protein L14 OS=Dictyostelium discoideum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.337e-17
Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = -3
Query:  221 FKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKL 598
            F  +VEIGRV ++NYG+   K  VI+DVLDQNRALV  P   + R  +NFK ++LT +K++I R  R  +LI A++ AD+  K    S  +K+  +  ++   DF+RFK  L + K    V  E+ KL
Sbjct:    5 FSLFVEIGRVVVINYGEYINKTAVIIDVLDQNRALVAGPHSGVERHIINFKWINLTPLKVNIQRGARINTLIAAIKAADLETKIAALSAVKKINARATKSNQTDFERFKANLIRRKLNKKVSGEVKKL 132          
BLAST of CN186429 vs. ExPASy Swiss-Prot
Match: RL14_DROVI (60S ribosomal protein L14 OS=Drosophila virilis GN=RpL14 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.514e-16
Identity = 51/132 (38.64%), Postives = 73/132 (55.30%), Query Frame = -3
Query:  215 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKK 604
            MPF+R+V+ GR+A  + G   G+LV IVDV+DQNR LVD P   + R +     L LT  +I        + + +A   +D+  +W+ S W  K     +R+ LNDFDRFKL  AK ++  L+      LKK
Sbjct:    1 MPFERFVQTGRIAKASAGPLKGRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWVDSDLKAQWKVSPWSVKAQNICKRSQLNDFDRFKLRYAKRQRNKLLTIAFNTLKK 132          
The following BLAST results are available for this feature:
BLAST of CN186429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL14_SCHPO2.258e-2042.3160S ribosomal protein L14 OS=Schizosaccharomyces p... [more]
RL14B_YEAST1.049e-1737.6060S ribosomal protein L14-B OS=Saccharomyces cerev... [more]
RL14A_YEAST1.370e-1737.6060S ribosomal protein L14-A OS=Saccharomyces cerev... [more]
RL14_DROME1.789e-1738.2460S ribosomal protein L14 OS=Drosophila melanogast... [more]
RL14_DICDI2.337e-1741.4160S ribosomal protein L14 OS=Dictyostelium discoid... [more]
RL14_DROVI1.514e-1638.6460S ribosomal protein L14 OS=Drosophila virilis GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002O03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186429 ID=CN186429; Name=CN186429; organism=Citrus sinensis; type=EST; length=648bp
TTTTTTTTTTACCGAAAACAAAGCTTGAGATCAGATTATACCTTTAAGGA
CATTACGAAAATATCTAAAAATTCTGTCCAAATAACAATTAACCCAAAAA
CGCCAAGCTGATGTTTTCTCATATTAATCAATACATTAATAGAATCAAAT
TGAAGCTGTAAGAACTAAAAACCAGAAAGGGGAACACAAGAGAGAAATTC
TATGCTGCATTCTCCTTCTTGAGTTTTGCAAGCTCCTGTCGAACAAGTCC
ACCCTTCTTGATCTTTGCCAACATGAGCTTGAACCTATCAAAATCATTCA
GTGCCGCTCTCCTTTTCTGGACAATCAGCTTCCTGCCCCAGGAGCTGTTT
TCCCATTTGTTATTCACATCAGCCTTCTCCATGGCTTCAATCAAAGACTT
CTTCCTGGGAACTCGATTGATGTCAATCTTAATATCCGTGAGAGAAAGCC
TCTTGAAGTTCATTTGGCTCCTCACCATATCAGGGGCATCAACAAGAGCC
CTGTTTTGATCAAGGACATCGACGATGACCACAAGCTTCCCATAGTCCTT
GCCGTAATTAACGAGAGCAACTCTTCCTATCTCCACGTACCTCTTGAACG
GCATTTTCGAAGATATTCAAGGCTCTGCCGGAGGAGCGAGGAGATCCT
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