CX674992

Overview
NameCX674992
Unique NameCX674992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5465 contig Csv1_Contig5465:1..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD2_HUMAN (ATP-binding cassette sub-family D member 2 OS=Homo sapiens GN=ABCD2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.350e-22
Identity = 76/246 (30.89%), Postives = 112/246 (45.53%), Query Frame = 3
Query:   45 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD-DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            E++ + TP  +    R L+  + E  HLL+ GP+G GK+SL R ++GLW    G +                    +   Q+M               F++PQRPYM LGSLR Q+IYP                            ++V     K  TD DL + L +V L +I+ R    D   +W  VLS GE+QR+  AR+   KP+  LLDE TSA+    E  +++  + AGI+ +S+ H
Sbjct:  481 ENVPIITPAGEVVASR-LNFKVEEGMHLLITGPNGCGKSSLFRILSGLWPVYEGVL-------------------YKPPPQHM---------------FYIPQRPYMSLGSLRDQVIYP----------------------------DSVDDMHDKGYTDQDLERILHNVHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAKGAGISLLSITH 663          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: Y036_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI0036 OS=Haemophilus influenzae GN=HI0036 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.419e-22
Identity = 74/247 (29.96%), Postives = 114/247 (46.15%), Query Frame = 3
Query:   45 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE--QIEAAGITYISVGH 779
            ++L+++ P    TL++ L++ + +   LL+ G SG+GKT+LLR +AGLWS   G+I                                   N  +    FL Q+PY+  G+L   L YP   + +                                S    ++ L  V+LG++  +L   +   +W+ +LSLGEQQRLAFARL+L KP +  LDE+T+++DE  E  +Y+  Q E    T ISVGH
Sbjct:  394 KNLSIQNPLGH-TLIKHLNITLPQGTSLLIQGKSGAGKTTLLRTIAGLWSYAEGEI-----------------------------------NCPTHNQLFLSQKPYVPQGNLMSALAYPNNADNI--------------------------------SHTQAVEILNKVQLGHLAEQL---EKEQDWTRILSLGEQQRLAFARLILHKPAVAFLDEATASMDEGLEFSMYQLLQQELPQTTIISVGH 569          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD2_MOUSE (ATP-binding cassette sub-family D member 2 OS=Mus musculus GN=Abcd2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.266e-21
Identity = 75/246 (30.49%), Postives = 111/246 (45.12%), Query Frame = 3
Query:   45 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD-DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            E++ + TP  +    R L+  + E  HLL+ GP+G GK+SL R ++GLW    G +                    +   Q+M               F++PQRPYM LGSLR Q+IYP   ++++                             K  TD DL + L  V L +I+ R    D   +W  VLS GE+QR+  AR+   KP+  LLDE TSA+    E  +++    AGI+ +S+ H
Sbjct:  482 ENVPIITPAGEVVASR-LNFKVEEGMHLLITGPNGCGKSSLFRILSGLWPVYEGVL-------------------YKPPPQHM---------------FYIPQRPYMSLGSLRDQVIYPDSADDMR----------------------------EKGYTDQDLERILHSVHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAIGAGISLLSITH 664          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD1_MOUSE (ATP-binding cassette sub-family D member 1 OS=Mus musculus GN=Abcd1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.159e-21
Identity = 73/245 (29.80%), Postives = 111/245 (45.31%), Query Frame = 3
Query:   45 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            E++ + TPT +  +V  L++ + E  HLL+ GP+G GK+SL R + GLW    G +      R                                  +F++PQRPYM +GSLR Q+IYP   E+++                S Q+LE +               L  V L +IL R    +   +W  VLS GE+QR+  AR+   +P+  LLDE TSA+    E  +++  + AGI  +S+ H
Sbjct:  477 ENIPIITPTGEV-VVASLNIRVEEGMHLLITGPNGCGKSSLFRILGGLWPTYSGVLYKPPPQR----------------------------------MFYIPQRPYMSVGSLRDQVIYPDSAEDMRRKG------------CSEQQLEAI---------------LGIVHLRHILQREGGWEAVCDWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGIALLSITH 659          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD1_HUMAN (ATP-binding cassette sub-family D member 1 OS=Homo sapiens GN=ABCD1 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.159e-21
Identity = 73/245 (29.80%), Postives = 111/245 (45.31%), Query Frame = 3
Query:   45 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            E++ + TP+ +  +V  L++ + E  HLL+ GP+G GK+SL R + GLW    G +      R                                  +F++PQRPYM +GSLR Q+IYP                           +E++ RK    S  DL   L+ V L +IL R    +   +W  VLS GE+QR+  AR+   +P+  LLDE TSA+    E  +++  + AGI  +S+ H
Sbjct:  477 ENIPIVTPSGEV-VVASLNIRVEEGMHLLITGPNGCGKSSLFRILGGLWPTYGGVLYKPPPQR----------------------------------MFYIPQRPYMSVGSLRDQVIYP-------------------------DSVEDMQRKGY--SEQDLEAILDVVHLHHILQREGGWEAMCDWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGIALLSITH 659          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD2_DICDI (ABC transporter D family member 2 OS=Dictyostelium discoideum GN=abcD2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.809e-21
Identity = 72/248 (29.03%), Postives = 114/248 (45.97%), Query Frame = 3
Query:   36 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            +  E++++ +P  K  LV +L   +   +++++ GP+GSGK+SL R +  LW    G +   +K R+E                                + F+PQ+PY+VLG+LR Q+IYP        + D  K  G+                    + DDL   L  V     + R  + D T +W + LS G++QR+A ARL   +PQ  +LDE TSA+ +  E  +YE  +  GIT  +V H
Sbjct:  518 IKFENVSIVSPEGKL-LVENLDFQVMPNQNVMITGPNGSGKSSLFRILGELWPLHCGTV---IKPRKED-------------------------------ILFVPQKPYLVLGTLRDQIIYPH-------SHDDMKKLGV--------------------TDDDLQHLLATVDPNLTIIRQWNWDDTKDWFTALSGGQKQRIAMARLFYHRPQYAILDECTSAVSDEVEGKIYETCKKLGITLFTVSH 703          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD2_RAT (ATP-binding cassette sub-family D member 2 OS=Rattus norvegicus GN=Abcd2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21
Identity = 75/246 (30.49%), Postives = 109/246 (44.31%), Query Frame = 3
Query:   45 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD-DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            E++ + TP  +  +   L+  + E  HLL+ GP+G GK+SL R ++GLW    G +                    +   Q+M               F++PQRPYM LGSLR Q+IYP                            ++V     K  TD DL   L  V L +I+ R    D   +W  VLS GE+QR+  AR+   KP+  LLDE TSA+    E  +++    AGI+ +S+ H
Sbjct:  482 ENVPIITPAGEV-VASSLNFKVEEGMHLLITGPNGCGKSSLFRILSGLWPVYEGVL-------------------YKPPPQHM---------------FYIPQRPYMSLGSLRDQVIYP----------------------------DSVDDMHEKGYTDRDLEHILHSVHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAIGAGISLLSITH 664          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: PXA2_YEAST (Peroxisomal long-chain fatty acid import protein 1 OS=Saccharomyces cerevisiae GN=PXA2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.071e-20
Identity = 81/266 (30.45%), Postives = 124/266 (46.62%), Query Frame = 3
Query:   18 EKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGS-LRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKL-------ENVG----RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            E     +  E++ L TP ++  LV +LS  +    HLL++GP+G GK+SL R + GLW                         +   N Q+      R+++R+   +F+LPQRPYM   S  R+Q+IYP   E+ K         G    +   Q L       EN+     +++SK  +  L  + ED +    +   ++      WS  L++G QQRLA AR+   KP+  +LDE TSA+    E  +YE  +  GI+ ISV H
Sbjct:  466 EYDDSRIKFENIPLITPANQV-LVPELSFDLKHGNHLLIIGPNGCGKSSLFRILGGLWPIRA---------------------TPNKNHQSKLIMPRRTVDRDC-AIFYLPQRPYMGNRSTFREQIIYPDSIEQFKERYHNDYDLGDADLIKILQLLDLEDLVTENMSLLLAQRTSKNDSQQL--STEDNQSPCAIKVRDAFSIVRNWSEELTIGVQQRLAMARMYYHKPKFAVLDECTSAVAPEMEQRMYENAQNFGISLISVCH 706          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: Y1467_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI1467 OS=Haemophilus influenzae GN=HI1467 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.501e-19
Identity = 71/234 (30.34%), Postives = 109/234 (46.58%), Query Frame = 3
Query:   84 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGH 779
            L+ +L++ +   + LL+ G SG+GKTSLL+A+AG++                        +++ +      G L            FLPQRPYM  G+LR+ + YP                                  +  PS  +L + ++D  LG  +  LN  +   +W ++LS GE QR+AF R+LL+KP +V LDE+TSALDE  E  LY+ I+     +  +SVGH
Sbjct:  405 LLNNLNINLENGDALLIQGASGTGKTSLLKAIAGIYP----------------------FETIGIAEHPCMGSL------------FLPQRPYMPQGTLREAICYP----------------------------------NINPSHAELEQTMKDCALGKYIHALNVKN---DWQAILSPGELQRVAFIRILLTKPDVVFLDETTSALDETTENLLYQTIKERLPEMIILSVGH 567          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: Y1819_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1819c/MT1867 OS=Mycobacterium tuberculosis GN=Rv1819c PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.003e-18
Identity = 78/259 (30.12%), Postives = 111/259 (42.86%), Query Frame = 3
Query:    9 LSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI--EAAGITYISVGH 779
            L+     + +++ D+ ++TP     L+  L + ++    L++ G SG+GKT+LLR++A LW                                  +G L R    N     FL Q PY+ LG+LR  + YP              SA  +P  T    L  V                       + P  + LD   +W+ VLS GEQQR+AFAR+LL+KP+ V LDESTSALD   E  LY+ +  E      ISV H
Sbjct:  418 LTRPSDDESVELNDIEVRTPAGDR-LIDPLDVRLDRGGSLVITGRSGAGKTTLLRSLAELWPYA-------------------------------SGTLHRPGGENE--TMFLSQLPYVPLGTLRDVVCYPN-------------SAAAIPDATLRDTLTKVA----------------------LAPLCDRLDEERDWAKVLSPGEQQRVAFARILLTKPKAVFLDESTSALDTGLEFALYQLLRSELPDCIVISVSH 607          
The following BLAST results are available for this feature:
BLAST of CX674992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ABCD2_HUMAN4.350e-2230.89ATP-binding cassette sub-family D member 2 OS=Homo... [more]
Y036_HAEIN7.419e-2229.96Uncharacterized ABC transporter ATP-binding protei... [more]
ABCD2_MOUSE1.266e-2130.49ATP-binding cassette sub-family D member 2 OS=Mus ... [more]
ABCD1_MOUSE2.159e-2129.80ATP-binding cassette sub-family D member 1 OS=Mus ... [more]
ABCD1_HUMAN2.159e-2129.80ATP-binding cassette sub-family D member 1 OS=Homo... [more]
ABCD2_DICDI4.809e-2129.03ABC transporter D family member 2 OS=Dictyostelium... [more]
ABCD2_RAT6.281e-2130.49ATP-binding cassette sub-family D member 2 OS=Ratt... [more]
PXA2_YEAST4.071e-2030.45Peroxisomal long-chain fatty acid import protein 1... [more]
Y1467_HAEIN4.501e-1930.34Uncharacterized ABC transporter ATP-binding protei... [more]
Y1819_MYCTU1.003e-1830.12Uncharacterized ABC transporter ATP-binding protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_9H11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9H11-O21-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674992 ID=CX674992; Name=CX674992; organism=Citrus sinensis; type=EST; length=780bp
ATGGAGCCTTGTCTCCAGAAAAGAGTCAGAAATTACTGGACATCGAGGAT
TTGACATTGAAGACACCAACAAGTAAAGCCACATTGGTCAGGGACTTATC
ATTGGTGATCAATGAAAAAGAGCATCTGCTGGTAATGGGACCTAGTGGGA
GTGGTAAAACTTCTTTGTTAAGGGCTATGGCTGGTCTTTGGAGTGATGGA
AGAGGAAAAATTACATTCTATGTGAAAGACAGGGAAGAAACTGACGCACA
TACTTCAGATGTGGACTCTCTTGAAGTAAATTCTCAAAATATGAATGGGG
AGCTTACAAGATCCATGAATAGAAACTCAAGAGGAGTATTTTTTCTTCCT
CAGAGACCATATATGGTTTTAGGTAGTCTTCGTCAACAATTGATTTATCC
TACGTGGACTGAAGAAGTGAAACTGGCGTCTGATGCTGCGAAATCCGCTG
GTTTAGTGCCATTCTTGACATCAGCACAAAAATTGGAAAATGTGGGAAGA
AAGTCTAGCAAGCCCTCAACAGATGATCTAATTAAGGCTCTAGAGGATGT
CAAACTTGGCTATATCTTGCCTCGTCTCAATAGCTTGGACACAACATATG
AGTGGTCCAGTGTTCTGTCCCTTGGGGAGCAGCAGCGCCTTGCTTTTGCA
CGTTTGTTGCTTTCAAAACCACAGATAGTTCTATTGGATGAGTCTACCAG
TGCTTTAGACGAAGCCAACGAGGCTCATTTATATGAGCAAATTGAAGCAG
CAGGCATAACATATATTAGTGTCGGCCATC
back to top