CX674992
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD2_HUMAN (ATP-binding cassette sub-family D member 2 OS=Homo sapiens GN=ABCD2 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.350e-22 Identity = 76/246 (30.89%), Postives = 112/246 (45.53%), Query Frame = 3 Query: 45 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD-DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 E++ + TP + R L+ + E HLL+ GP+G GK+SL R ++GLW G + + Q+M F++PQRPYM LGSLR Q+IYP ++V K TD DL + L +V L +I+ R D +W VLS GE+QR+ AR+ KP+ LLDE TSA+ E +++ + AGI+ +S+ H Sbjct: 481 ENVPIITPAGEVVASR-LNFKVEEGMHLLITGPNGCGKSSLFRILSGLWPVYEGVL-------------------YKPPPQHM---------------FYIPQRPYMSLGSLRDQVIYP----------------------------DSVDDMHDKGYTDQDLERILHNVHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAKGAGISLLSITH 663
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: Y036_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI0036 OS=Haemophilus influenzae GN=HI0036 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 7.419e-22 Identity = 74/247 (29.96%), Postives = 114/247 (46.15%), Query Frame = 3 Query: 45 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE--QIEAAGITYISVGH 779 ++L+++ P TL++ L++ + + LL+ G SG+GKT+LLR +AGLWS G+I N + FL Q+PY+ G+L L YP + + S ++ L V+LG++ +L + +W+ +LSLGEQQRLAFARL+L KP + LDE+T+++DE E +Y+ Q E T ISVGH Sbjct: 394 KNLSIQNPLGH-TLIKHLNITLPQGTSLLIQGKSGAGKTTLLRTIAGLWSYAEGEI-----------------------------------NCPTHNQLFLSQKPYVPQGNLMSALAYPNNADNI--------------------------------SHTQAVEILNKVQLGHLAEQL---EKEQDWTRILSLGEQQRLAFARLILHKPAVAFLDEATASMDEGLEFSMYQLLQQELPQTTIISVGH 569
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD2_MOUSE (ATP-binding cassette sub-family D member 2 OS=Mus musculus GN=Abcd2 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.266e-21 Identity = 75/246 (30.49%), Postives = 111/246 (45.12%), Query Frame = 3 Query: 45 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD-DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 E++ + TP + R L+ + E HLL+ GP+G GK+SL R ++GLW G + + Q+M F++PQRPYM LGSLR Q+IYP ++++ K TD DL + L V L +I+ R D +W VLS GE+QR+ AR+ KP+ LLDE TSA+ E +++ AGI+ +S+ H Sbjct: 482 ENVPIITPAGEVVASR-LNFKVEEGMHLLITGPNGCGKSSLFRILSGLWPVYEGVL-------------------YKPPPQHM---------------FYIPQRPYMSLGSLRDQVIYPDSADDMR----------------------------EKGYTDQDLERILHSVHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAIGAGISLLSITH 664
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD1_MOUSE (ATP-binding cassette sub-family D member 1 OS=Mus musculus GN=Abcd1 PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.159e-21 Identity = 73/245 (29.80%), Postives = 111/245 (45.31%), Query Frame = 3 Query: 45 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 E++ + TPT + +V L++ + E HLL+ GP+G GK+SL R + GLW G + R +F++PQRPYM +GSLR Q+IYP E+++ S Q+LE + L V L +IL R + +W VLS GE+QR+ AR+ +P+ LLDE TSA+ E +++ + AGI +S+ H Sbjct: 477 ENIPIITPTGEV-VVASLNIRVEEGMHLLITGPNGCGKSSLFRILGGLWPTYSGVLYKPPPQR----------------------------------MFYIPQRPYMSVGSLRDQVIYPDSAEDMRRKG------------CSEQQLEAI---------------LGIVHLRHILQREGGWEAVCDWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGIALLSITH 659
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD1_HUMAN (ATP-binding cassette sub-family D member 1 OS=Homo sapiens GN=ABCD1 PE=1 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 2.159e-21 Identity = 73/245 (29.80%), Postives = 111/245 (45.31%), Query Frame = 3 Query: 45 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 E++ + TP+ + +V L++ + E HLL+ GP+G GK+SL R + GLW G + R +F++PQRPYM +GSLR Q+IYP +E++ RK S DL L+ V L +IL R + +W VLS GE+QR+ AR+ +P+ LLDE TSA+ E +++ + AGI +S+ H Sbjct: 477 ENIPIVTPSGEV-VVASLNIRVEEGMHLLITGPNGCGKSSLFRILGGLWPTYGGVLYKPPPQR----------------------------------MFYIPQRPYMSVGSLRDQVIYP-------------------------DSVEDMQRKGY--SEQDLEAILDVVHLHHILQREGGWEAMCDWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGIALLSITH 659
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD2_DICDI (ABC transporter D family member 2 OS=Dictyostelium discoideum GN=abcD2 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.809e-21 Identity = 72/248 (29.03%), Postives = 114/248 (45.97%), Query Frame = 3 Query: 36 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 + E++++ +P K LV +L + +++++ GP+GSGK+SL R + LW G + +K R+E + F+PQ+PY+VLG+LR Q+IYP + D K G+ + DDL L V + R + D T +W + LS G++QR+A ARL +PQ +LDE TSA+ + E +YE + GIT +V H Sbjct: 518 IKFENVSIVSPEGKL-LVENLDFQVMPNQNVMITGPNGSGKSSLFRILGELWPLHCGTV---IKPRKED-------------------------------ILFVPQKPYLVLGTLRDQIIYPH-------SHDDMKKLGV--------------------TDDDLQHLLATVDPNLTIIRQWNWDDTKDWFTALSGGQKQRIAMARLFYHRPQYAILDECTSAVSDEVEGKIYETCKKLGITLFTVSH 703
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD2_RAT (ATP-binding cassette sub-family D member 2 OS=Rattus norvegicus GN=Abcd2 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21 Identity = 75/246 (30.49%), Postives = 109/246 (44.31%), Query Frame = 3 Query: 45 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD-DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 E++ + TP + + L+ + E HLL+ GP+G GK+SL R ++GLW G + + Q+M F++PQRPYM LGSLR Q+IYP ++V K TD DL L V L +I+ R D +W VLS GE+QR+ AR+ KP+ LLDE TSA+ E +++ AGI+ +S+ H Sbjct: 482 ENVPIITPAGEV-VASSLNFKVEEGMHLLITGPNGCGKSSLFRILSGLWPVYEGVL-------------------YKPPPQHM---------------FYIPQRPYMSLGSLRDQVIYP----------------------------DSVDDMHEKGYTDRDLEHILHSVHLYHIVQREGGWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAIGAGISLLSITH 664
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: PXA2_YEAST (Peroxisomal long-chain fatty acid import protein 1 OS=Saccharomyces cerevisiae GN=PXA2 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.071e-20 Identity = 81/266 (30.45%), Postives = 124/266 (46.62%), Query Frame = 3 Query: 18 EKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGS-LRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKL-------ENVG----RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 E + E++ L TP ++ LV +LS + HLL++GP+G GK+SL R + GLW + N Q+ R+++R+ +F+LPQRPYM S R+Q+IYP E+ K G + Q L EN+ +++SK + L + ED + + ++ WS L++G QQRLA AR+ KP+ +LDE TSA+ E +YE + GI+ ISV H Sbjct: 466 EYDDSRIKFENIPLITPANQV-LVPELSFDLKHGNHLLIIGPNGCGKSSLFRILGGLWPIRA---------------------TPNKNHQSKLIMPRRTVDRDC-AIFYLPQRPYMGNRSTFREQIIYPDSIEQFKERYHNDYDLGDADLIKILQLLDLEDLVTENMSLLLAQRTSKNDSQQL--STEDNQSPCAIKVRDAFSIVRNWSEELTIGVQQRLAMARMYYHKPKFAVLDECTSAVAPEMEQRMYENAQNFGISLISVCH 706
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: Y1467_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI1467 OS=Haemophilus influenzae GN=HI1467 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.501e-19 Identity = 71/234 (30.34%), Postives = 109/234 (46.58%), Query Frame = 3 Query: 84 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGH 779 L+ +L++ + + LL+ G SG+GKTSLL+A+AG++ +++ + G L FLPQRPYM G+LR+ + YP + PS +L + ++D LG + LN + +W ++LS GE QR+AF R+LL+KP +V LDE+TSALDE E LY+ I+ + +SVGH Sbjct: 405 LLNNLNINLENGDALLIQGASGTGKTSLLKAIAGIYP----------------------FETIGIAEHPCMGSL------------FLPQRPYMPQGTLREAICYP----------------------------------NINPSHAELEQTMKDCALGKYIHALNVKN---DWQAILSPGELQRVAFIRILLTKPDVVFLDETTSALDETTENLLYQTIKERLPEMIILSVGH 567
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: Y1819_MYCTU (Uncharacterized ABC transporter ATP-binding protein Rv1819c/MT1867 OS=Mycobacterium tuberculosis GN=Rv1819c PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.003e-18 Identity = 78/259 (30.12%), Postives = 111/259 (42.86%), Query Frame = 3 Query: 9 LSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI--EAAGITYISVGH 779 L+ + +++ D+ ++TP L+ L + ++ L++ G SG+GKT+LLR++A LW +G L R N FL Q PY+ LG+LR + YP SA +P T L V + P + LD +W+ VLS GEQQR+AFAR+LL+KP+ V LDESTSALD E LY+ + E ISV H Sbjct: 418 LTRPSDDESVELNDIEVRTPAGDR-LIDPLDVRLDRGGSLVITGRSGAGKTTLLRSLAELWPYA-------------------------------SGTLHRPGGENE--TMFLSQLPYVPLGTLRDVVCYPN-------------SAAAIPDATLRDTLTKVA----------------------LAPLCDRLDEERDWAKVLSPGEQQRVAFARILLTKPKAVFLDESTSALDTGLEFALYQLLRSELPDCIVISVSH 607 The following BLAST results are available for this feature:
BLAST of CX674992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >CX674992 ID=CX674992; Name=CX674992; organism=Citrus sinensis; type=EST; length=780bpback to top |