CX674992

Overview
NameCX674992
Unique NameCX674992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: LCNCL_LACLA (Lactococcin transport/processing ATP-binding protein lcnC-like OS=Lactococcus lactis subsp. lactis GN=lcnC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.832e-12
Identity = 64/233 (27.47%), Postives = 107/233 (45.92%), Query Frame = 3
Query:   84 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA-LEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            ++ ++ L I E E L ++G SGSGK++L++ +   +    G IT    D ++ D H                +L R +N       +LPQ+PY+  GS+   L+          AS+A     ++  +  A+                 I+A +E ++LGY     +        +S LS G++QR+A AR LLS  +I++LDE+TS LD   E  + + + A   T I + H
Sbjct:  497 VLSEIKLSIKENEKLTIVGISGSGKSTLVKLLVNFFQPTSGTITLGGIDLQQFDKH----------------QLRRLIN-------YLPQQPYIFTGSIMDNLLLG--------ASEATSQEEIIRAVELAE-----------------IRADIEQMQLGYQTELSSD-------ASSLSGGQKQRIALARALLSPAKILILDEATSNLDMITEKKILKNLLALDKTIIFIAH 674          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: POTA_MYCH2 (Spermidine/putrescine import ATP-binding protein potA OS=Mycoplasma hyopneumoniae (strain 232) GN=potA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11
Identity = 75/294 (25.51%), Postives = 127/294 (43.20%), Query Frame = 3
Query:   18 EKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVN-------SQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAK--SAGLVPFLTSAQKLENVGRKSSKPSTDD-----------LIKALEDVKLGYILPRLNSLDTTYEWSSVLSL----------------GEQQRLAFARLLLSKPQIVLLDESTSALD----EANEAHLYEQIEAAGITYISVGH 779
            EKS+ ++ + D+  +    K  ++  ++L I   + + ++GPSGSGKT++LR + G     RG+I F   D ++  AH  D  ++  +       S   N E    + R  +    +P   +     L+++     W ++ K      K   A L   L + Q L+   RK  +   DD           L    E  K  Y+  R+   +   E + ++ L                G +QR+A AR L+ +P+IVLLDE  SALD    +  +  L +  +  G+T+I V H
Sbjct:    5 EKSEIIISLVDVDKEFGDKK--VLDQINLDIKRGDFVTLLGPSGSGKTTILRLIGGFEWTTRGEIKFNGIDIKDVPAHKRDTATIFQDYALFPHLSVRGNIEFGLKLKRIKKKAEEIPDVVWKKFEHLKKK-----WQDKQKRKIKELKILQAHLEKLLENPQ-LDIKKRKKLQDKLDDSDFRYSNWENYLTSKSESFKKKYLTRRITKQEINKEITDIIDLVGLTGNENRAISELSGGMKQRVALARSLVIEPEIVLLDEPLSALDTKIRQKMQVFLKKIQQKLGLTFIFVTH 290          
The following BLAST results are available for this feature:
BLAST of CX674992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
LCNCL_LACLA1.832e-1227.47Lactococcin transport/processing ATP-binding prote... [more]
POTA_MYCH27.696e-1125.51Spermidine/putrescine import ATP-binding protein p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_9H11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9H11-O21-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674992 ID=CX674992; Name=CX674992; organism=Citrus sinensis; type=EST; length=780bp
ATGGAGCCTTGTCTCCAGAAAAGAGTCAGAAATTACTGGACATCGAGGAT
TTGACATTGAAGACACCAACAAGTAAAGCCACATTGGTCAGGGACTTATC
ATTGGTGATCAATGAAAAAGAGCATCTGCTGGTAATGGGACCTAGTGGGA
GTGGTAAAACTTCTTTGTTAAGGGCTATGGCTGGTCTTTGGAGTGATGGA
AGAGGAAAAATTACATTCTATGTGAAAGACAGGGAAGAAACTGACGCACA
TACTTCAGATGTGGACTCTCTTGAAGTAAATTCTCAAAATATGAATGGGG
AGCTTACAAGATCCATGAATAGAAACTCAAGAGGAGTATTTTTTCTTCCT
CAGAGACCATATATGGTTTTAGGTAGTCTTCGTCAACAATTGATTTATCC
TACGTGGACTGAAGAAGTGAAACTGGCGTCTGATGCTGCGAAATCCGCTG
GTTTAGTGCCATTCTTGACATCAGCACAAAAATTGGAAAATGTGGGAAGA
AAGTCTAGCAAGCCCTCAACAGATGATCTAATTAAGGCTCTAGAGGATGT
CAAACTTGGCTATATCTTGCCTCGTCTCAATAGCTTGGACACAACATATG
AGTGGTCCAGTGTTCTGTCCCTTGGGGAGCAGCAGCGCCTTGCTTTTGCA
CGTTTGTTGCTTTCAAAACCACAGATAGTTCTATTGGATGAGTCTACCAG
TGCTTTAGACGAAGCCAACGAGGCTCATTTATATGAGCAAATTGAAGCAG
CAGGCATAACATATATTAGTGTCGGCCATC
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