CN186425

Overview
NameCN186425
Unique NameCN186425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186425_ssr76 microsatellite CN186425_ssr76:76..91. BLAST: Citrus ESTs to Prunus persica proteins V1
CN186425_ssr105 microsatellite CN186425_ssr105:105..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5226 contig Csv1_Contig5226:562..1366. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186425 vs. ExPASy Swiss-Prot
Match: CALSC_ARATH (Callose synthase 12 OS=Arabidopsis thaliana GN=CALS12 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.518e-41
Identity = 82/202 (40.59%), Postives = 124/202 (61.39%), Query Frame = -3
Query:  200 ESWWEKEQQHLLYSGKRGIIVEILLSLRFFMYQYGLVYHLSFTKSTQNFLVYGASWVVIIFVLLLVKGMSVGRRRFSANFQLLFRMIKGLVXXXXXXXXXXXXXIPHMTFKDILLCILAFMPTGWGLLLIAQACKPLMQRGGI-WESIKTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQ 802
            E WW +EQ HL  +GK G+ VEI+L LRFF +QYG+VY L     + +  VY  SW+ I  + +L   +   R ++SA   + +R+++ L+               H +F DI   +LAF+PTGWG+LLIAQ  +  ++   I W ++ ++AR Y+I+ G+L+  PVAFL+W P     QTR+LFN+AFSRGL+I +I+ G+
Sbjct: 1573 EKWWYEEQDHLRNTGKAGLFVEIILVLRFFFFQYGIVYQLKIANGSTSLFVYLFSWIYIFAIFVLFLVIQYARDKYSAKAHIRYRLVQFLLIVLAILVIVALLEFTHFSFIDIFTSLLAFIPTGWGILLIAQTQRKWLKNYTIFWNAVVSVARMYDILFGILIMVPVAFLSWMPGFQSMQTRILFNEAFSRGLRIMQIVTGK 1774          
BLAST of CN186425 vs. ExPASy Swiss-Prot
Match: CALSB_ARATH (Callose synthase 11 OS=Arabidopsis thaliana GN=CALS11 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.883e-40
Identity = 80/200 (40.00%), Postives = 122/200 (61.00%), Query Frame = -3
Query:  200 SWWEKEQQHLLYSGKRGIIVEILLSLRFFMYQYGLVYHLSFTKSTQNFLVYGASWVVIIFVLLLVKGMSVGRRRFSANFQLLFRMIKGLVXXXXXXXXXXXXXIPHMTFKDILLCILAFMPTGWGLLLIAQACKPLMQRGGIWESIKTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTRMLFNQAFSRGLQISRILGGQ 799
            +WW +EQ+HL  +G  G ++EI+L LRFF +QY +VYHL   ++  +  VY  SW  II ++ +       ++R+S    + +R I+ LV                +T  D+L+ +LAF+PTGWGL+ IAQ  KP +    +W+++ ++AR Y++  GL++  PVA L+W P     QTR+LFN+AFSRGLQIS IL G+
Sbjct: 1566 TWWNEEQEHLKTTGVWGKLLEIILDLRFFFFQYSIVYHLRIAENRTSIGVYLISWGCIIGIVAIYITTIYAQKRYSVKEHIKYRFIQFLVILLTVLVVVMMLQFTKLTVVDLLISLLAFVPTGWGLISIAQVLKPFLLSTVVWDTVISVARFYDLFFGLIVMAPVALLSWLPGFQNMQTRILFNEAFSRGLQISIILAGK 1765          
The following BLAST results are available for this feature:
BLAST of CN186425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CALSC_ARATH1.518e-4140.59Callose synthase 12 OS=Arabidopsis thaliana GN=CAL... [more]
CALSB_ARATH4.883e-4040.00Callose synthase 11 OS=Arabidopsis thaliana GN=CAL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002O01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186425 ID=CN186425; Name=CN186425; organism=Citrus sinensis; type=EST; length=804bp
CTTTTTTTTCCGTTATGATATTATAATTATAATATAAACACTTGTGCAGC
ATCCGTTCATCCTGTGGGTGTGGATACACACACACACACACATACAAATT
ACAAGATTGATTGATTGATTGACTGGGATGAGAGATATATCTATGTATGC
ATGCATTTATTCACTCCTTACTTTTGGAAGACCTGTCCTTCTCCTTCCTC
TGTCCTCCAAGAATACGAGAAATCTGTAAACCTCTACTGAATGCTTGGTT
GAATAGCATTCTTGTTTGAAACTCTGAAACAAATGGGAACCACGCCAAGA
ATGCAACCGGGGTGAATAGAAGTAATCCCATCACTATTTCATAACCACGA
GCAAGTGTCTTAATTGATTCCCAAATTCCACCACGTTGCATCAATGGCTT
ACAAGCTTGTGCGATCAGTAGTAGTCCCCATCCTGTTGGCATGAAGGCGA
GTATACACAGCAAGATATCTTTGAAGGTCATATGAGGGATTGCTATCAAA
ATGATGAAGATAGTAATAAATGAAATGAATACCAAACCCTTAATCATTCT
AAACAAAAGCTGGAAATTTGCACTGAATCGTCGCCTTCCAACAGACATTC
CCTTCACCAGCAACAATACGAAAATGATCACAACCCATGAAGCACCATAA
ACCAGAAAGTTCTGGGTACTCTTGGTAAAGCTCAAGTGATAAACGAGACC
ATATTGATACATGAAGAAGCGCAATGACAACAATATCTCAACAATGATGC
CGCGTTTCCCAGAGTAAAGGAGATGCTGTTGTTCCTTCTCCCACCAGGAT
TCCC
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