CN186422

Overview
NameCN186422
Unique NameCN186422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2539 contig Csv1_Contig2539:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: DID4_YEAST (DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae GN=DID4 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = -3
Query:  155 TKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGD--DXXXXXXELVNQVLDEIGIDINQELVNAPSSTVA-APAVKGKVAQAEATGNDD---GGIDSDLQARLDNLRR 502
            T  +  MNR MNLP LQ+I  EFE+Q++ M    E M +AID+ + GD  D      E+VN+VLDEIG+D+N +L + P + V+ AP  +  +   E  G      G  D DLQARL+ L++
Sbjct:  110 TGLLAGMNRTMNLPQLQRISMEFEKQSDLMGQRQEFMDEAIDNVM-GDEVDEDEEADEIVNKVLDEIGVDLNSQLQSTPQNLVSNAPIAETAMGIPEPIGAGSEFHGNPDDDLQARLNTLKK 230          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: YDS1_SCHPO (Uncharacterized protein C4F8.01 OS=Schizosaccharomyces pombe GN=SPAC4F8.01 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = -3
Query:  155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514
            ++G T+ +  MN+ MN+P++ +I Q+FER+NE ME   E++ + +DDAL  DD      ELVN+VLDEIG+D++Q L +A +     P +K                + +LQARLD L +
Sbjct:  106 MRGATRLLTGMNKSMNIPAMARITQQFERENEIMEQRQEMIDENMDDALEEDD-EEEADELVNKVLDEIGVDLSQGLPDAATQIGTVPELK---------------TEDNLQARLDELAK 209          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2B_XENTR (Charged multivesicular body protein 2b OS=Xenopus tropicalis GN=chmp2b PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -3
Query:  176 KAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQA 499
            K M  +N++M+     + MQ F+++N KMEM  E++ D +DD     D      ++VNQVLDEIGI+I+ ++  APS+    P+     + ++++G  D  I+  L+A
Sbjct:  107 KTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPS----TSASKSSGISDEEIERQLKA 210          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CH2BA_XENLA (Charged multivesicular body protein 2b-A OS=Xenopus laevis GN=chmp2b-A PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -3
Query:  176 KAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQA 499
            K M  +N++M+     + MQ F+++N KMEM  E++ D +DD     +      ++VNQVLDEIGI+I+ ++  APS+    P+     + +++TG  D  I+  L+A
Sbjct:  107 KTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPS----ASASKSTGISDEEIERQLKA 210          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 2
Query:  605 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTA 712
            AAEEGQVIGCHTVEAWNEQLQK N+TK L+VVDFTA
Sbjct:    2 AAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTA 37          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2B_PONAB (Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  203 KAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDD 499
            K M  +N++M+     + MQ F+++N KMEM  E++ D +DD   G D      ++VNQVLDEIGI+I+ ++  APS+  + P+     + ++AT +D+
Sbjct:  107 KTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPS----ASTSKATISDE 201          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2B_MOUSE (Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  203 KAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDD 499
            K M  +N++M+     + MQ F+++N KMEM  E++ D +DD   G D      ++VNQVLDEIGI+I+ ++  APS+  + P+     + ++AT +D+
Sbjct:  107 KTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPS----ASTSKATISDE 201          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2B_HUMAN (Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  203 KAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDD 499
            K M  +N++M+     + MQ F+++N KMEM  E++ D +DD   G D      ++VNQVLDEIGI+I+ ++  APS+  + P+     + ++AT +D+
Sbjct:  107 KTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPS----ASTSKATISDE 201          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2B_BOVIN (Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = -3
Query:  248 KAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPA 499
            K M  +N++M+     + MQ F+++N KMEM  E++ D +DD   G D      ++VNQVLDEIGI+I+ ++  APS+  + P+
Sbjct:  107 KTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPS 190          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2B_DANRE (Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 37/109 (33.94%), Postives = 62/109 (56.88%), Query Frame = -3
Query:  176 TKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQA 502
            TK M  +N++M+     + +Q F+++  KM+M  E+M D +D+            ++VNQVLDEIGI+I+ ++ +APS+    P+     A A+A G  D  I+  L+A
Sbjct:  106 TKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMAHAPSAARKTPS----AATAKADGISDEDIERQLKA 210          
The following BLAST results are available for this feature:
BLAST of CN186422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DID4_YEAST1.285e-1441.80DOA4-independent degradation protein 4 OS=Saccharo... [more]
YDS1_SCHPO2.192e-1438.33Uncharacterized protein C4F8.01 OS=Schizosaccharom... [more]
CHM2B_XENTR7.798e-1234.26Charged multivesicular body protein 2b OS=Xenopus ... [more]
CH2BA_XENLA7.798e-1234.26Charged multivesicular body protein 2b-A OS=Xenopu... [more]
TRXH_RICCO1.018e-1188.89Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
CHM2B_PONAB1.018e-1136.36Charged multivesicular body protein 2b OS=Pongo ab... [more]
CHM2B_MOUSE1.018e-1136.36Charged multivesicular body protein 2b OS=Mus musc... [more]
CHM2B_HUMAN1.018e-1136.36Charged multivesicular body protein 2b OS=Homo sap... [more]
CHM2B_BOVIN1.330e-1139.29Charged multivesicular body protein 2b OS=Bos taur... [more]
CHM2B_DANRE1.737e-1133.94Charged multivesicular body protein 2b OS=Danio re... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002N23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186422 ID=CN186422; Name=CN186422; organism=Citrus sinensis; type=EST; length=714bp
AGTCTGAAAAGCAATACATTGAAATCTCGAATTGTCTCACATCCACATTG
ATAAACGCTGGCAGAATTTCACAAATATATTACATCGCTCAAATGAACCC
TAACTTTCTATAGTAGAGCCGATGTCCATATTATACACAAGACAAGTATT
GGGTTCTCCTCAAATTGTCTAACCTGGCTTGCAAGTCACTATCTATCCCA
CCATCATCGTTTCCTGTTGCTTCTGCTTGTGCGACTTTACCCTTTACAGC
TGGTGCGGCCACAGTAGATGATGGTGCATTCACAAGCTCTTGATTGATGT
CAATTCCAATCTCATCAAGAACCTGGTTCACGAGTTCTTCTGTTTCTTCC
TCTTCATCATCACCGTGCAAAGCATCGTCAATTGCATCACCCATGACCTC
AGTCACCATTTCCATCTTCTCATTCTGCCTCTCAAATTCTTGCATAATCT
TCTGCAGTGAAGGCAAGTTCATCTGTCTATTCATCTGGCCCATTGCCTTT
GTCACACCTTTCACAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAG
AAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAAT
GGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCT
GGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTT
GATTTCACTGCTTC
back to top