CN186422

Overview
NameCN186422
Unique NameCN186422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2539 contig Csv1_Contig2539:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CH2BB_XENLA (Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 37/108 (34.26%), Postives = 62/108 (57.41%), Query Frame = -3 
Query:  176 KAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQA 499
            K M  +N++M+     + MQ F+++N KMEM  E++ D +DD     +      ++VNQVLDEIGI+I+ ++  APS+    P+     + A++ G  D  I+  L+A
Sbjct:  107 KTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPS----TSAAKSKGISDEEIERQLKA 210
[Close]
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2B_CHICK (Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 37/108 (34.26%), Postives = 62/108 (57.41%), Query Frame = -3 
Query:  176 KAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQA 499
            K M  +N++M+     + MQ F+++N KMEM  E++ D +DD     D      ++VNQVLDEIGI+I+ ++  APS+    P+     + ++A+   D  I+  L+A
Sbjct:  107 KTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKMAKAPSAARGLPS----ASTSKASTISDEEIERQLKA 210
The following BLAST results are available for this feature:
BLAST of CN186422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CH2BB_XENLA1.737e-1134.26Charged multivesicular body protein 2b-B OS=Xenopu... [more]
CHM2B_CHICK3.870e-1134.26Charged multivesicular body protein 2b OS=Gallus g... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002N23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186422 ID=CN186422; Name=CN186422; organism=Citrus sinensis; type=EST; length=714bp
AGTCTGAAAAGCAATACATTGAAATCTCGAATTGTCTCACATCCACATTG
ATAAACGCTGGCAGAATTTCACAAATATATTACATCGCTCAAATGAACCC
TAACTTTCTATAGTAGAGCCGATGTCCATATTATACACAAGACAAGTATT
GGGTTCTCCTCAAATTGTCTAACCTGGCTTGCAAGTCACTATCTATCCCA
CCATCATCGTTTCCTGTTGCTTCTGCTTGTGCGACTTTACCCTTTACAGC
TGGTGCGGCCACAGTAGATGATGGTGCATTCACAAGCTCTTGATTGATGT
CAATTCCAATCTCATCAAGAACCTGGTTCACGAGTTCTTCTGTTTCTTCC
TCTTCATCATCACCGTGCAAAGCATCGTCAATTGCATCACCCATGACCTC
AGTCACCATTTCCATCTTCTCATTCTGCCTCTCAAATTCTTGCATAATCT
TCTGCAGTGAAGGCAAGTTCATCTGTCTATTCATCTGGCCCATTGCCTTT
GTCACACCTTTCACAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAG
AAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAAT
GGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCT
GGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTT
GATTTCACTGCTTC
back to top